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@naturalis

Naturalis Biodiversity Center

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  1. barcode-constrained-phylogeny barcode-constrained-phylogeny Public

    Pipeline for building topologically-constrained phylogenies from DNA barcode data

    Python 2 3

Repositories

Showing 10 of 173 repositories
  • sdmdl Public

    Species Distribution Modelling using Deep Learning

    naturalis/sdmdl’s past year of commit activity
    Python 23 MIT 11 4 21 Updated Jul 21, 2024
  • DWCAConfig Public

    DWCA Configuratie bestanden om data te downloaden uit ES (NBA)

    naturalis/DWCAConfig’s past year of commit activity
    Shell 1 2 1 1 Updated Jul 19, 2024
  • barcode-constrained-phylogeny Public

    Pipeline for building topologically-constrained phylogenies from DNA barcode data

    naturalis/barcode-constrained-phylogeny’s past year of commit activity
    Python 2 Apache-2.0 3 21 0 Updated Jul 15, 2024
  • barcode_validator Public

    Standardized validation of barcodes

    naturalis/barcode_validator’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Jul 15, 2024
  • barcode-classify-transformer Public Forked from JSchreijer/barcode-classify-transformer
    naturalis/barcode-classify-transformer’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated Jun 12, 2024
  • mycodiversity Public

    Pipelines for analyzing fungal diversity

    naturalis/mycodiversity’s past year of commit activity
    Python 1 MIT 0 0 3 Updated May 26, 2024
  • barcode-classify-protax-fungi Public

    Profiling PROTAX-fungi for quick and coarse classification of ITS metabarcoding reads

    naturalis/barcode-classify-protax-fungi’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated May 15, 2024
  • barcode-phylogenetic-diversity Public

    Repository for experiments with QIIME-based alpha/beta PD metrics

    naturalis/barcode-phylogenetic-diversity’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Apr 29, 2024
  • galaxy-tool-lca Public
    naturalis/galaxy-tool-lca’s past year of commit activity
    Python 3 2 1 0 Updated Apr 9, 2024
  • DNABERT_S Public Forked from MAGICS-LAB/DNABERT_S

    DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models

    naturalis/DNABERT_S’s past year of commit activity
    Python 0 12 0 0 Updated Mar 21, 2024
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