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@neherlab

neherlab

Computational biology at the Biozentrum, Basel

Popular repositories Loading

  1. covid19_scenarios covid19_scenarios Public

    Models of COVID-19 outbreak trajectories and hospital demand

    JavaScript 1.4k 355

  2. treetime treetime Public

    Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction

    Jupyter Notebook 214 54

  3. pan-genome-analysis pan-genome-analysis Public

    Processing pipeline for pan-genome visulization and exploration

    Python 129 37

  4. SARS-CoV-2_variant-reports SARS-CoV-2_variant-reports Public

    Informal summaries of notable SARS-CoV-2 lineages

    104 12

  5. pangraph pangraph Public

    A bioinformatic toolkit to align genome assemblies into pangenome graphs

    Julia 77 7

  6. pan-genome-visualization pan-genome-visualization Public

    Forked from wdingx/pan-genome-visualization

    Visualization of the pan-genome output by panX

    JavaScript 59 14

Repositories

Showing 10 of 83 repositories
  • neherlab/nextclade_data_workflows’s past year of commit activity
    Python 4 1 10 1 Updated Jun 30, 2024
  • pangraph Public

    A bioinformatic toolkit to align genome assemblies into pangenome graphs

    neherlab/pangraph’s past year of commit activity
    Julia 77 MIT 7 8 2 Updated Jun 28, 2024
  • treetime Public

    Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction

    neherlab/treetime’s past year of commit activity
    Jupyter Notebook 214 MIT 54 28 3 Updated Jun 24, 2024
  • neherlab/phylogeography’s past year of commit activity
    Python 0 0 0 0 Updated Jun 22, 2024
  • SARS-CoV-2_variant-reports Public

    Informal summaries of notable SARS-CoV-2 lineages

    neherlab/SARS-CoV-2_variant-reports’s past year of commit activity
    104 12 2 3 Updated May 27, 2024
  • neherlab/h5nx-Clades’s past year of commit activity
    Python 0 2 0 0 Updated May 7, 2024
  • neherlab/HIV-nextclade’s past year of commit activity
    Python 0 0 0 0 Updated May 6, 2024
  • neherlab/simple-annotator’s past year of commit activity
    Python 0 0 0 0 Updated Feb 29, 2024
  • spike-only Public

    Spike-only SARS-CoV-2 Nextstrain build

    neherlab/spike-only’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Dec 13, 2023
  • BA286 Public

    BA.2.86 project with Sigal lab

    neherlab/BA286’s past year of commit activity
    Python 2 MIT 1 0 1 Updated Nov 8, 2023

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