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Issues: nf-core/sarek
Community feedback needed: (pre)-validation at the Sarek level
#798
opened Oct 13, 2022 by
maxulysse
Open
33
Community feedback needed: Add tutorials/faqs describing diff...
#955
opened Feb 28, 2023 by
FriederikeHanssen
Open
3
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Issues list
Human and mouse read disambiguation for PDX samples?
enhancement
New feature or request
#1578
opened Jun 30, 2024 by
apsteinberg
Test and document that Sarek can handle input-samplesheets with mixed samples
enhancement
New feature or request
#1576
opened Jun 25, 2024 by
asp8200
Error while loading shared library for BWA in Sarek pipeline with Singularity
bug
Something isn't working
#1575
opened Jun 21, 2024 by
Simonassaf
Suboptimal error msg on missing input
bug
Something isn't working
#1566
opened Jun 13, 2024 by
asp8200
Pooled normals for CNVkit
enhancement
New feature or request
#1562
opened Jun 12, 2024 by
HenriettaHolze
too many genotypes in the combined VCF record
bug
Something isn't working
#1560
opened Jun 11, 2024 by
fan040
Add spring-icon to subway-map
enhancement
New feature or request
#1558
opened Jun 10, 2024 by
asp8200
single sample haplotypecaller with no dbsnp causes error because of missing dbsnp_tbi
bug
Something isn't working
#1550
opened Jun 2, 2024 by
cmatKhan
Please add VEP plugins (Conservation and Condel)
enhancement
New feature or request
#1549
opened May 30, 2024 by
andrew2k
Remove duplicated config-snippet for SENTIEON_GVCFTYPER
bug
Something isn't working
#1548
opened May 30, 2024 by
asp8200
FILTERMUTECTCALLS is not run for tumor-only samples when there is no germline_resource
bug
Something isn't working
#1546
opened May 27, 2024 by
brandenjlynch
Add more intricate CI tests to verify multiple/single lanes run well
#1544
opened May 27, 2024 by
maxulysse
Mapped bam and bai published in different folders
bug
Something isn't working
#1540
opened May 22, 2024 by
asp8200
Check if any empty folders are created
bug
Something isn't working
#1537
opened May 22, 2024 by
maxulysse
Nextflow docker: Error response from daemon
bug
Something isn't working
#1532
opened May 21, 2024 by
C2i-PeterChung
Different sample name handling causes issues with merging
bug
Something isn't working
#1528
opened May 16, 2024 by
njspix
Mutect2 run only on one intervals file
bug
Something isn't working
#1525
opened May 16, 2024 by
ekushele
port CREATE_INTERVALS_BED to nf-core/modules
enhancement
New feature or request
#1523
opened May 15, 2024 by
maxulysse
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