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Setting different n_cpus in DefaultInference gives results in the same time
bug
Something isn't working
#288
by yihming
was closed Jun 13, 2024
[BUG] local variable 'beta_init' referenced before assignment
bug
Something isn't working
#280
by redst4r
was closed May 21, 2024
[BUG] UFunc Casting Error when Fitting Dispersions
bug
Something isn't working
#275
by zaki-bds
was closed Apr 26, 2024
[BUG] No module named 'pydeseq2.default_inference'
bug
Something isn't working
#271
by Agamart
was closed Apr 18, 2024
How to process gene expression data from Affymetrix in Python
#270
by abearab
was closed Apr 17, 2024
support similar apeAdapt argument as in DESeq2::lfcShrink()
enhancement
New feature or request
#264
by awalsh17
was closed Apr 16, 2024
[BUG] The vst() function does not work when the algorithm switches to a mean-based dispersion trend.
bug
Something isn't working
#263
by dguin
was closed May 30, 2024
Question (Continuous covariates)/ error with refit_cooks "ValueError: setting an array element with a sequence."
bug
Something isn't working
#258
by Marwansha
was closed Mar 25, 2024
[BUG] Python3.8 is still listed in documentation and README as being the default but is not supported anymore
bug
Something isn't working
#255
by jeandut
was closed Mar 15, 2024
[BUG] pydeseq2 v0.4.7 throws IndexError due to anndata awkward variable length array not observed with 0.4.4
bug
Something isn't working
#251
by dguin
was closed Mar 21, 2024
[BUG] DE Testing on negative binomial examples
bug
Something isn't working
#249
by ilan-gold
was closed Mar 21, 2024
[BUG] All padj is same when independent_filter = False
bug
Something isn't working
#245
by kgod336336
was closed Mar 1, 2024
IndexError: too many indices for array: array is 1-dimensional, but 2 were indexed.
bug
Something isn't working
#242
by lizelx
was closed Feb 28, 2024
Bug Report: 'n_cpus' and 'n_processes' Keywords Not Recognized in pydeseq2.dds.DeseqDataSet (Version 0.4.4)
bug
Something isn't working
#241
by chloesavignac
was closed Mar 12, 2024
Why is replacement not done if it would result in all zero counts?
bug
Something isn't working
#238
by chubukov
was closed Feb 23, 2024
[BUG] KeyError in cooks replacement
bug
Something isn't working
#237
by chubukov
was closed Feb 23, 2024
[BUG] Impossible to generate de dds objtect with DeseqDataSet with this update
bug
Something isn't working
#233
by victorsanchezarevalo
was closed Feb 1, 2024
[BUG] Negative coefficients in the trend curve
bug
Something isn't working
#231
by BorisMuzellec
was closed Feb 19, 2024
2
[BUG] error when running lfc_shrink
bug
Something isn't working
#224
by Joey-Xue
was closed Jan 8, 2024
_refit_without_outliers raise design matrix is not full rank error
bug
Something isn't working
#189
by michelegentili93
was closed Oct 18, 2023
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