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circRNA_finder Public
Pipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).
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cedernaes2018_analysis Public
Analysis of RNA-seq and DNA methylation data for paper by Cedernaes et al. 2018
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NGI-ChIPseq Public
Forked from SciLifeLab/NGI-ChIPseqNextflow ChIP-seq data analysis pipeline, National Genomics Infrastructure, Science for Life Laboratory in Stockholm
Groovy MIT License UpdatedNov 6, 2017 -
OnPLS Public
Forked from tomlof/OnPLSOnPLS: Orthogonal Projections to Latent Structures in Multiblock and Path Model Data Analysis
Python BSD 3-Clause "New" or "Revised" License UpdatedSep 26, 2017 -
piq-single Public
PIQ DNA footprinting. Cloned from https://bitbucket.org/thashim/piq-single
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clusterflow Public
Forked from ewels/clusterflowA pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
Perl GNU General Public License v3.0 UpdatedApr 19, 2016 -
R_genomics_intro Public
Some toy examples in R, illustrating tools for genomics.Part of presentation in R user group meetup
R UpdatedMar 24, 2015
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