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@bioinf-mcb

Bioinformatics at Małopolska Centre of Biotechnology

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  1. gisaid-scrapper gisaid-scrapper Public

    Scrapping tool for GISAID data regarding SARS-CoV-2

    Python 41 16

  2. Metagenomic-DeepFRI Metagenomic-DeepFRI Public

    Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.

    Python 30 6

  3. metagenome_assembly metagenome_assembly Public

    WDL Workflow for metagenome assembly

    Python 9 3

  4. qiime2-api-tutorials qiime2-api-tutorials Public

    QIIME 2 tutorials using the Artifact API

    Jupyter Notebook 5 6

  5. MANIAC MANIAC Public

    Computation of average nucleotide identity with the use of MMseqs2

    Python 5

  6. BERT-torchserve-quickstart BERT-torchserve-quickstart Public

    Serving BERT embeddings via Torchserve

    Python 4 3

Repositories

Showing 10 of 33 repositories
  • Metagenomic-DeepFRI Public

    Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.

    bioinf-mcb/Metagenomic-DeepFRI’s past year of commit activity
    Python 30 GPL-3.0 6 1 0 Updated Jun 28, 2024
  • MANIAC Public

    Computation of average nucleotide identity with the use of MMseqs2

    bioinf-mcb/MANIAC’s past year of commit activity
    Python 5 0 0 0 Updated May 22, 2024
  • q2-predict-dysbiosis Public
    bioinf-mcb/q2-predict-dysbiosis’s past year of commit activity
    Python 3 GPL-3.0 0 1 0 Updated May 10, 2024
  • thaliana_etr_etre Public

    Repository of code for publication of endophyte project with Mycoplanta

    bioinf-mcb/thaliana_etr_etre’s past year of commit activity
    R 0 MIT 0 0 0 Updated May 9, 2024
  • dynamo Public
    bioinf-mcb/dynamo’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Feb 27, 2024
  • phage-protein-modularity-figures Public

    code related to the paper: Protein mosaicism in bacteriophages is extensive and associated with functions linked to core nucleotide metabolism and host tropism .

    bioinf-mcb/phage-protein-modularity-figures’s past year of commit activity
    R 0 0 0 0 Updated Oct 20, 2023
  • phage-protein-modularity-data Public

    Phage project computational pipeline.

    bioinf-mcb/phage-protein-modularity-data’s past year of commit activity
    Python 1 0 0 0 Updated Oct 19, 2023
  • metagenome_assembly Public

    WDL Workflow for metagenome assembly

    bioinf-mcb/metagenome_assembly’s past year of commit activity
    Python 9 3 1 0 Updated Aug 15, 2023
  • q2-dynamo Public
    bioinf-mcb/q2-dynamo’s past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Aug 10, 2023
  • q2-health-index Public
    bioinf-mcb/q2-health-index’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 3 1 0 Updated Aug 3, 2023
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