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@bioinform

The Bioinformatics Repository

A bioinformatics repository led by Roche Sequencing Solutions

Popular repositories Loading

  1. somaticseq somaticseq Public

    An ensemble approach to accurately detect somatic mutations using SomaticSeq

    Python 189 53

  2. neusomatic neusomatic Public

    NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection

    Python 167 50

  3. rnacocktail rnacocktail Public

    Jupyter Notebook 86 48

  4. varsim varsim Public

    VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications

    Java 78 31

  5. metasv metasv Public

    MetaSV: An accurate and integrative structural-variant caller for next generation sequencing

    Python 53 22

  6. breakseq2 breakseq2 Public

    BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants

    Python 23 5

Repositories

Showing 10 of 19 repositories
  • somaticseq Public

    An ensemble approach to accurately detect somatic mutations using SomaticSeq

    bioinform/somaticseq’s past year of commit activity
    Python 189 BSD-2-Clause 53 5 0 Updated Jul 1, 2024
  • varsim Public

    VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications

    bioinform/varsim’s past year of commit activity
    Java 78 BSD-2-Clause 31 36 5 Updated Apr 7, 2023
  • SeqLib Public Forked from walaj/SeqLib

    C++ htslib/bwa-mem/fermi interface for interrogating sequence data

    bioinform/SeqLib’s past year of commit activity
    C++ 0 37 0 0 Updated Feb 4, 2023
  • ichorCNA Public Forked from GavinHaLab/ichorCNA

    Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

    bioinform/ichorCNA’s past year of commit activity
    R 0 GPL-3.0 88 0 1 Updated Sep 22, 2022
  • bwa Public Forked from walaj/bwa

    Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

    bioinform/bwa’s past year of commit activity
    C 1 Apache-2.0 554 0 0 Updated Jan 16, 2022
  • fermi-lite Public Forked from walaj/fermi-lite

    Standalone C library for assembling Illumina short reads in small regions

    bioinform/fermi-lite’s past year of commit activity
    C 0 MIT 23 0 0 Updated Jan 16, 2022
  • Daedalus Public
    bioinform/Daedalus’s past year of commit activity
    C++ 1 0 0 0 Updated Jan 6, 2022
  • neusomatic Public

    NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection

    bioinform/neusomatic’s past year of commit activity
    Python 167 50 22 8 Updated Dec 23, 2021
  • swifr Public
    bioinform/swifr’s past year of commit activity
    C++ 3 1 0 0 Updated Oct 25, 2021
  • ecTMB Public
    bioinform/ecTMB’s past year of commit activity
    R 16 10 4 0 Updated Aug 22, 2021

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