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Issues list

max_o not always defined in Bio.motifs.matrix.dist_pearson
#555 opened Jun 3, 2015 by ghuls updated Jan 22, 2016
4
Record the new evidence codes in UniProt
#416 opened Nov 10, 2014 by peterjc updated Jan 26, 2016
6
Improvements to motifs.meme
#793 opened Mar 28, 2016 by saketkc updated Apr 2, 2016
2 tasks
2
Enhancement: PyPanda for gene network analysis
#814 opened Apr 22, 2016 by davidvi updated Apr 22, 2016
1
Implement overlapping search in Seq.py
#866 opened Jun 28, 2016 by Jake-Gillberg updated Jun 29, 2016
1
Add alignment score, % identity, % similarity, % gaps, etc to EmbossIO From Redmine
#891 opened Jul 22, 2016 by twrightsman updated Jul 25, 2016
5
Delay imports of sre_compile and CodonTable during SeqIO import [from RedMine #3330] From Redmine
#894 opened Jul 24, 2016 by MarkusPiotrowski updated Jul 25, 2016
1
is_terminal bug in newick trees From Redmine
#889 opened Jul 22, 2016 by twrightsman updated Jul 25, 2016
2
Cache paths in Bio.Phylo trees for later use From Redmine
#885 opened Jul 22, 2016 by twrightsman updated Jul 25, 2016
1
PSI-Blast with Biopython
#875 opened Jul 18, 2016 by arjun-mani updated Aug 3, 2016
4
Lazy loading Bio.Data.CodonTable in Bio.Seq? Enhancement
#956 opened Oct 8, 2016 by peterjc updated Oct 8, 2016
polypeptide get_ca_list() crashes if a CA is missing
#969 opened Oct 12, 2016 by amelieH updated Oct 13, 2016
6
PDB file HETATMs cannot be alternative location of a residue that is an ATOM From Redmine
#991 opened Nov 12, 2016 by lennax updated Nov 12, 2016
Bio.PDB build_peptides sometimes gives shorter peptide sequences than expected From Redmine
#992 opened Nov 12, 2016 by lennax updated Nov 12, 2016
6
_parse_pdb_header_list: REVDAT is for oldest entry From Redmine
#994 opened Nov 12, 2016 by lennax updated Nov 12, 2016
3
Download REBASE files on install or use Enhancement
#972 opened Oct 13, 2016 by vincentdavis updated Nov 12, 2016
8
Bio.PDB.Entity.Entity; get_list => iter, detach_child => delitem, has_id => contains
#995 opened Nov 13, 2016 by vincentdavis updated Nov 13, 2016
@etal
Populate seqfeature.display_name Enhancement From Redmine
#999 opened Nov 14, 2016 by vincentdavis updated Nov 15, 2016
New frame translation method (from Redmine, bug 1999) From Redmine
#1002 opened Nov 17, 2016 by MarkusPiotrowski updated Nov 23, 2016
3
Add support for mmCIF pdbx_poly_seq_scheme in MMCIFParser Enhancement
#1007 opened Nov 24, 2016 by peterjc updated Nov 24, 2016
No way to set max and min of scale in GenomeDiagram? Enhancement
#205 opened Aug 8, 2013 by Phlya updated Dec 1, 2016
3
Improve data representation styles in GenomeDiagram? Enhancement
#208 opened Aug 8, 2013 by Phlya updated Dec 1, 2016
10
Scale "below" plot in GenomeDiagram? Enhancement
#209 opened Aug 8, 2013 by Phlya updated Dec 1, 2016
4
BED/WIG/... files in Biopython? Enhancement
#278 opened Jan 18, 2014 by Phlya updated Dec 1, 2016
6
Create a mock-isolated, high-speed test suite Testing
#384 opened Oct 21, 2014 by zancas updated Dec 1, 2016
4
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