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Pull requests: biopython/biopython

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Pull requests list

Implement z-scoring and gap optimization in CE Align
#4750 opened Jun 20, 2024 by Will-Tyler Loading…
3 tasks done
19
Python 3.13: Replace deprecated PyEval_CallObject()
#4706 opened Apr 19, 2024 by penguinpee Loading…
7
Add support for reading PFM from Cys2His2 Zinc Finger Proteins PWM Predictor.
#4693 opened Apr 8, 2024 by ghuls Loading…
3 tasks done
4
Updating REBASE parser on Restriction Enzyme Dictionary creation script
#4685 opened Mar 30, 2024 by Rolando-at-Arzeda • Draft
3 tasks done
11
Feat/add bgzf typing
#4654 opened Mar 7, 2024 by bzoracler • Draft
3 tasks done
15
SSBond parsing addition - 2nd attempt
#4650 opened Mar 5, 2024 by suchanek Loading…
1 task
9
Add method to resolve polytomies in Phylo.BaseTree
#4634 opened Feb 23, 2024 by kbseah Loading…
3 tasks done
2
Preserve branch length in Phylo.TreeMixin.prune if keep_root_length=True
#4601 opened Jan 23, 2024 by michaelfm1211 Loading…
3 tasks done
1
7
Support escaped quotes in Newick trees
#4560 opened Dec 31, 2023 by michaelfm1211 Loading…
3 tasks done
2
7
Allow qblast to accept lists of organisms to include/exclude
#4516 opened Nov 28, 2023 by netogallo Loading…
5
Non english months in pdb headers 4449
#4450 opened Sep 20, 2023 by exs-gbartlett Loading…
2 tasks done
1
13
bgzf: add utf-8 support
#4436 opened Sep 4, 2023 by ikravets Loading…
3 tasks done
1
7
Mvisani patch 1
#4433 opened Aug 26, 2023 by mvisani Loading…
3 tasks done
1
File.as_handle_and_flag
#4410 opened Aug 11, 2023 by speleo3 Loading…
3 tasks done
11
No insertion codes with auth_residues=False
#4390 opened Jul 27, 2023 by speleo3 Loading…
3 tasks done
1
Re-enable MYSQL in GitHub Actions testing Testing
#4299 opened May 9, 2023 by peterjc Loading…
3 tasks done
6
SeqIO parse side effect remove
#4280 opened Apr 10, 2023 by BabaYaga1221 Loading…
3 tasks done
30
MultipleSeqAlignment position mapping
#4249 opened Mar 1, 2023 by kamurani • Draft
1 of 3 tasks
1
3
feat(fuzzing): Adds fuzz harness for PDB.Superimposer
#4225 opened Feb 3, 2023 by silvergasp Loading…
3 tasks done
feat(fuzzing): Add a fuzz test for the PDB parser
#4224 opened Feb 1, 2023 by silvergasp Loading…
3 tasks done
9
Fix MMCIFParser warning and IUPAC extended one letter codes
#4202 opened Dec 15, 2022 by Truman-Xu Loading…
3 tasks done
14
Correct the number of flexibility scores
#4170 opened Nov 18, 2022 by Ruibin-Liu Loading…
3 tasks done
17
raise and error if an invalid Newick unquoted label name is found while parsing the tree
#4139 opened Oct 20, 2022 by amatria Loading…
3 tasks done
1
4
Support multi-line qualifier values
#4073 opened Sep 7, 2022 by v-raja Loading…
3 tasks done
5
List data folders under setup.py's packages list
#4051 opened Aug 23, 2022 by peterjc Loading…
3 tasks done
1
ProTip! What’s not been updated in a month: updated:<2024-05-29.