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Pull requests: biopython/biopython

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Pull requests list

Created function stripping evidence codes from SwissProt dat
#762 opened Jan 27, 2016 by lpryszcz Loading…
7
Adding lazy loading parsers to SeqIO
#356 opened Aug 27, 2014 by eparker05 Loading…
7
Added functions for kinematics
#533 opened Apr 29, 2015 by SuperRaccoon Loading…
3
Parse more with Emboss.PrimerSearch.read()
#539 opened May 6, 2015 by bsmith89 Loading…
5
Add Bio.motifs.consensus submodule.
#551 opened May 28, 2015 by ghuls Loading…
2
bug fix to handle NoneType when writing to newick with branch_length_only=True
#552 opened May 29, 2015 by ajm Loading…
@etal
15
Created indexer for seqxml files
#557 opened Jun 3, 2015 by xzy3 Loading…
5
Feature hmmer3b2
#579 opened Jul 9, 2015 by bow Loading…
2 of 8 tasks
1
Additional KEGG feature
#587 opened Jul 31, 2015 by sasankh Loading…
3
Sniff for errors in data returned by NCBI EFetch
#590 opened Aug 5, 2015 by peterjc Loading…
10
Adding fixes and methods to TreeConstruction
#629 opened Oct 7, 2015 by jwillis0720 Loading…
Bio.Phylo JSON tree format
#726 opened Dec 11, 2015 by iosonofabio Loading…
12
Add CoordinateMapper and unittest
#309 opened Apr 13, 2014 by lennax Loading…
15
Added 'simple_consensus' as a modification of 'dumb_consensus' with tests
#727 opened Dec 14, 2015 by fjossandon Loading…
3
reading/writing Stockholm alignment GF and GC annotation
#769 opened Feb 11, 2016 by frubino Loading…
14
add mysql.connector when python version > 3
#816 opened Apr 26, 2016 by forrestzhang Loading…
@mdehoon
5
Parsing value-less qualifiers in EMBL/GenBank like /pseudo
#905 opened Aug 2, 2016 by peterjc Loading…
1
2
Update Polypeptide.py
#970 opened Oct 12, 2016 by amelieH Loading…
8
Return FASTQ and SFF quality scores as an array (RFC, WIP)
#1057 opened Feb 10, 2017 by peterjc Loading…
12
Update test_NCBIXML.py
#1087 opened Mar 8, 2017 by Gasta88 Loading…
1
26
Add CATHDB API support
#1258 opened May 26, 2017 by saketkc Loading…
6
Add 'testseq' function
#1306 opened Jul 3, 2017 by Adil-Iqbal Loading…
14
Move self-test for Bio.PDB.PSEA
#1336 opened Jul 21, 2017 by souravsingh Loading…
24
Guidance2_patch
#1367 opened Aug 17, 2017 by grabear Loading…
37
Implement z-scoring and gap optimization in CE Align
#4750 opened Jun 20, 2024 by Will-Tyler Loading…
3 tasks done
19
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