Release 2.0.1 (PR #162)

Features -------- - Add GPUs to cobra template. (#142) - Lower startup time of the CLI. (#153) Bugfixes -------- - Already submitted benchmarks are now hidden in the summary of ``mdbenchmark submit``. (#139) - Plotting will now work, even when some benchmarks are unfinished. (#140) - Restarting benchmarks with ``mdbenchmark submit --force`` works again. (#141) Misc ---- - Use ``poetry`` to manage Python dependencies and the project in general. (#155)
bio-phys · Mar 4, 2020 · 3d72698 · 3d72698
2 parents fc468f5 + 7940eee
commit 3d72698
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diff --git a/.gitignore b/.gitignore
@@ -11,6 +11,7 @@
 .eggs/
 build/
 dist/
+pip-wheel-metadata/
 
 # VSCode
 .vscode/
@@ -28,10 +29,5 @@ docs/.doctrees/
 docs/_build/
 docs/.doctrees/
 
-# Documentation
-docs/_build/
-docs/.doctrees/
-
-# Ignore local Pipfile
-Pipfile
-Pipfile.lock
+# Misc
+.DS_Store
diff --git a/.readthedocs.yml b/.readthedocs.yml
@@ -0,0 +1,11 @@
+version: 2
+
+python:
+  install:
+    - method: pip
+      path: .
+      extra_requirements:
+        - docs
+
+sphinx:
+  configuration: docs/conf.py
diff --git a/.travis.yml b/.travis.yml
@@ -1,6 +1,6 @@
+os: linux
 language: python
-sudo: false
-python: "3.6"
+python: "3.8"
 
 branches:
   only:
@@ -14,11 +14,6 @@ cache:
 
 env:
   global:
-    - MAIN_CMD="pytest"
-    - SETUP_CMD="mdbenchmark -v"
-    - CONDA_DEPENDENCIES="datreant jinja2 click==6.7 pandas matplotlib xdg<2"
-    - CONDA_CHANNELS="conda-forge"
-    - NUMPY_VERSION=stable
     - PIP_CACHE_DIR=$HOME/.cache/pip
     - CODECOV=""
     - PYTEST_COV=""
@@ -27,63 +22,59 @@ env:
 jobs:
   include:
     - stage: "Linux - Unit tests"
-      name: "Python 3.6"
+      name: "Python 3.8"
       env:
         - CODECOV="--cov mdbenchmark"
         - PYTEST_COV="pytest-cov codecov"
     - name: "Python 3.7"
       language: python
-      python: 3.7
+      python: "3.7"
+    - name: "Python 3.6"
+      language: python
+      python: "3.6"
       dist: xenial
-      sudo: true
     - name: "Python 3.5"
       python: "3.5"
     - name: "Python 2.7"
       python: "2.7"
 
     - stage: "Linting and formatting"
       name: "Formatting with black"
-      install:
-        - $UPGRADE_PIP
-        - pip install black
-      script: make reformat-check
+      script: poetry run make reformat-check
     - name: "Linting with flake8"
-      install:
-        - $UPGRADE_PIP
-        - pip install flake8
-      script: make flake8
+      script: poetry run make flake8
     - name: "Sorting with isort"
-      install:
-        - $UPGRADE_PIP
-        - pip install isort
-      script: make isort
+      script: poetry run make isort-check
     - name: "Lint reStructuredText"
-      install:
-        - $UPGRADE_PIP
-        - pip install restructuredtext_lint
-      script: make rst-lint
+      script: poetry run make rst-lint
     - name: "Try to build documentation"
-      install:
-        - $UPGRADE_PIP
-        - pip install . sphinx-click
-      script: python setup.py build_sphinx
+      install: poetry install --extras docs
+      script:
+        - cd docs
+        - poetry run make build
 
     - stage: "macOS - Unit tests"
-      language: generic
-      name: "Python 2.7"
-      env: PYTHON_VERSION=2.7
-      install:
-        - git clone git://github.com/astropy/ci-helpers.git
-        - source ci-helpers/travis/setup_conda.sh
-        - pip install -e .
-      script: $MAIN_CMD $SETUP_CMD
+      os: osx
+      osx_image: xcode11.2
+      language: shell
+      before_script:
+        - bash .travis/before_script.sh
+      before_cache:
+        - rm -f "$HOME/Library/Caches/pip/log/debug.log"
+      cache:
+        directories:
+          - "$HOME/Library/Caches/pip"
+          - "$HOME/Library/Caches/pypoetry"
 
-install:
+before_install:
   - $UPGRADE_PIP
-  - pip install . $PYTEST_COV
+  - pip install poetry
+
+install:
+  - poetry install
 
 script:
-  - pytest $CODECOV
+  - poetry run pytest $CODECOV
 
 after_success:
   - if [ -z ${CODECOV} ]; then echo "Skipping codecov submit"; else codecov; fi
diff --git a/.travis/before_script.sh b/.travis/before_script.sh
@@ -0,0 +1,5 @@
+#!/bin/bash
+set -euo pipefail
+
+mkdir -p $HOME/.matplotlib
+echo "backend: TkAgg" > $HOME/.matplotlib/matplotlibrc