Pull requests: broadinstitute/gatk
Pull requests list
Removed restriction that physical phasing may only be run in ERC modes.
#5772
opened Mar 7, 2019 by
tfenne
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Changed ReferenceConfidenceModel to use offsetlength counting deletions for ending comparisons
bug
JointCalling
#5665
opened Feb 12, 2019 by
jamesemery
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Pulled the HaplotypeCallerIntegration tests into a common interface between spark and non-spark
#5451
opened Nov 27, 2018 by
jamesemery
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Added the ability to reset random generation based on the start position of reads to the resivoirDownsample
#5448
opened Nov 26, 2018 by
jamesemery
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Add Python package version check to StreamingScriptExecutor.
#5081
opened Aug 2, 2018 by
cmnbroad
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Memory-less HMM transition matrix for baseline copy-number states and silent CNV classes
Copy Number tools
Germline CNV
#4988
opened Jul 6, 2018 by
mbabadi
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BQSR: restore ability to specify custom covariates and to disable standard covariates
#4688
opened Apr 20, 2018 by
droazen
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Updates to
gatk launch script to fix properties and config file definitions.
CLI
#4653
opened Apr 12, 2018 by
jonn-smith
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Added in code to populate the name of VariantContext objects.
Engine
#4571
opened Mar 23, 2018 by
jonn-smith
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