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collaborativebioinformatics

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  1. STRdust STRdust Public

    Python 13 3

  2. Sniphles Sniphles Public

    Sniphles is a read-based phasing approach for phased variant calling of structural variants.

    Python 12 2

  3. GeneVar GeneVar Public

    Jupyter Notebook 12 3

  4. nibSV nibSV Public

    Nim 9 4

  5. Disease_subsetting Disease_subsetting Public

    Colorectal cancer CMs subtyping and personalized medication recommendation based on RNA seq pathway analysis

    Jupyter Notebook 9 2

  6. GeneVar2 GeneVar2 Public

    R 8 6

Repositories

Showing 10 of 79 repositories
  • SpikeVarTykeVar Public
    collaborativebioinformatics/SpikeVarTykeVar’s past year of commit activity
    Python 7 MIT 4 0 0 Updated Jun 20, 2024
  • VarClust Public Forked from fasterius/VarClust

    A Python package for clustering of single nucleotide variants from high-through seqencing data.

    collaborativebioinformatics/VarClust’s past year of commit activity
    Python 0 3 0 0 Updated May 23, 2024
  • NIST-GREX Public
    collaborativebioinformatics/NIST-GREX’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated May 5, 2024
  • isocomp Public

    Isocomp provides tools to compare any number of transcriptome assemblies (GTF + fasta) from long read RNAseq

    collaborativebioinformatics/isocomp’s past year of commit activity
    HTML 2 MIT 9 4 0 Updated May 3, 2024
  • SVHack_metagenomics Public

    Everything is bigger in Texas: Pan-Structural Variation hackathon in the Cloud!

    collaborativebioinformatics/SVHack_metagenomics’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated May 3, 2024
  • SVHack_assemblyvmapping Public
    collaborativebioinformatics/SVHack_assemblyvmapping’s past year of commit activity
    0 MIT 2 0 0 Updated May 3, 2024
  • SVHack_Mendelian Public
    collaborativebioinformatics/SVHack_Mendelian’s past year of commit activity
    Python 4 MIT 2 0 1 Updated May 3, 2024
  • PhytoKmerCNV Public
    collaborativebioinformatics/PhytoKmerCNV’s past year of commit activity
    Shell 6 MIT 0 0 0 Updated May 3, 2024
  • VariantSurvival Public

    VariantSurvival a Shiny app/ R package to identify genotype-treatment response

    collaborativebioinformatics/VariantSurvival’s past year of commit activity
    R 1 MIT 2 3 2 Updated Mar 12, 2024
  • DMDL_manuscript Public
    collaborativebioinformatics/DMDL_manuscript’s past year of commit activity
    TeX 0 MIT 0 0 0 Updated Nov 27, 2023
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