[go: nahoru, domu]
Skip to content

Pull requests: dib-lab/khmer

New pull request New
Clear current search query, filters, and sorts
43 Open 817 Closed
43 Open 817 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Composition of graphs - new C++ and Python classes
#1392 opened Jun 25, 2016 by ctb Loading…
9 tasks
1
khmer multiprocessing VS test/simplify (seqan)
#656 opened Nov 14, 2014 by camillescott Loading… unscheduled
4
Thread-safety for hashtable
#876 opened Mar 18, 2015 by camillescott Loading… 1.4+
14
introduce 1m read skip in calc-error-profile
#1003 opened May 15, 2015 by ctb Loading… unscheduled
2
WIP: Refactor khmer's graph traversal
#1080 opened Jun 11, 2015 by camillescott Loading… unscheduled
2
Handle borked-but-obvious FASTQ formats with an option
#1165 opened Jul 10, 2015 by SherineAwad Loading… unscheduled
Pylint Part Deux
#1178 opened Jul 18, 2015 by bocajnotnef Loading… unscheduled
some clean up of sandbox/calc-median-distribution.py
#1237 opened Aug 10, 2015 by ctb Loading… unscheduled
move multi-rename.py to scripts
#1283 opened Aug 28, 2015 by SherineAwad Loading… unscheduled
6
Added multihreaded tests for scripts with -T that did not have any before
#1346 opened Mar 19, 2016 by ghost Loading…
4 of 9 tasks
3
Add script similar to slice-reads-by-coverage, but support paired reads
#1366 opened May 11, 2016 by adamjorr Loading…
3 of 9 tasks
6
Working branch for fixing Python 3 streaming '--gzip -o -' bug.
#1367 opened May 11, 2016 by ctb Loading…
9 tasks
Scalable CountMin Sketch support
#434 opened May 17, 2014 by ctb Loading… unscheduled
Add functionality to extract unassembled reads from a data set, given an assembly
#1386 opened Jun 15, 2016 by ctb Loading…
9 tasks
1
(Re?)introduce consume_fasta progress indicator
#1410 opened Jul 18, 2016 by standage Loading…
9 tasks
7
Open PR for Streaming Partitioning
#1502 opened Nov 3, 2016 by camillescott Loading…
12 tasks
3
Experimenting with queues and threads
#1553 opened Dec 13, 2016 by betatim Loading…
8 tasks
18
rename consume to consume_string
#1589 opened Jan 24, 2017 by ctb Loading…
8 tasks
Atomic nibble instead of mutex
#1601 opened Jan 30, 2017 by betatim Loading…
8 tasks done
7
Fix compiler and linker warnings
#1605 opened Feb 1, 2017 by betatim Loading…
2 tasks done
14
[WIP] Add a -H/--hash-function option.
#1623 opened Feb 16, 2017 by ctb Loading…
8 tasks
1
[WIP] Add infrastructure for fixed random seeds in tests
#1655 opened Mar 1, 2017 by betatim Loading…
8 tasks
5
[WIP] Enable automatic detecting and loading all filter/sketch types Work In Progress
#1717 opened Jun 1, 2017 by standage Loading…
8 tasks
2
Promote error correction scripts from sandbox
#1743 opened Jul 10, 2017 by wltrimbl Loading…
6 of 19 tasks
8
Add Pytest 8 compat
#1923 opened Feb 17, 2024 by mr-c Loading…
5 tasks done
ProTip! Type g i on any issue or pull request to go back to the issue listing page.