Input folder requirements #22
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That's an easy fix, I just need to use find instead of compgen, we'll
implement it in release 3.
…On Fri, Jan 24, 2020 at 11:18 AM Kjell Petersen ***@***.***> wrote:
Currently the code requires some fastq files resides in the root folder of
the input folder, while others may be further organized into subfolders. We
need to support a top level input folder, with multiple sub folders
(separating samples, runs, flowcells) in a logical way, and no fastq files
present at the top level.
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I decided to add it in milestone 2 anyways. |
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Currently the code requires some fastq files resides in the root folder of the input folder, while others may be further organized into subfolders. We need to support a top level input folder, with multiple sub folders (separating samples, runs, flowcells) in a logical way, and no fastq files present at the top level.
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