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Pull requests: genome/cle-myeloseqhd

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Pull requests list

Root name change on staging drive
#15 by dufeiyu was merged Mar 30, 2022 Loading…
Fix the path of amplicon bed
#3 by dufeiyu was merged Nov 4, 2021 Loading…
Remove the codes of getting fastq read count
#4 by dufeiyu was merged Nov 12, 2021 Loading…
More updates
#5 by dufeiyu was merged Nov 30, 2021 Loading…
Fix code indentation
#6 by dufeiyu was merged Nov 30, 2021 Loading…
Direct dragen input/output to local staging drive
#7 by dufeiyu was merged Dec 3, 2021 Loading…
Remove Illumina rundir in the end
#8 by dufeiyu was merged Dec 8, 2021 Loading…
More update to the pipeline
#9 by dufeiyu was merged Dec 16, 2021 Loading…
Bug fix and whitespace cleanup
#10 by dufeiyu was merged Dec 17, 2021 Loading…
Apply MinReadsPerFamily parameter
#11 by dufeiyu was merged Jan 25, 2022 Loading…
Major update of MyeloseqHD Workflow
#12 by dufeiyu was merged Mar 30, 2022 Loading…
Use containerized path
#13 by dufeiyu was merged Mar 30, 2022 Loading…
Initial Commit
#1 by dufeiyu was merged Nov 4, 2021 Loading…
Remove unused module
#14 by dufeiyu was merged Mar 30, 2022 Loading…
Minor update
#16 by dufeiyu was merged Apr 4, 2022 Loading…
Minor update to filterHaloplex.py
#17 by dufeiyu was merged Apr 4, 2022 Loading…
Add make_report task
#18 by dufeiyu was merged Apr 9, 2022 Loading…
Use python3 path
#19 by dufeiyu was merged Apr 9, 2022 Loading…
Two fixes
#20 by dufeiyu was merged Apr 11, 2022 Loading…
Set null value as NONE
#21 by dufeiyu was merged Apr 12, 2022 Loading…
Some minor update
#22 by dufeiyu was merged Apr 12, 2022 Loading…
Replace NaN with 0
#23 by dufeiyu was merged Apr 13, 2022 Loading…
Update Coverage Bed
#24 by dufeiyu was merged Apr 14, 2022 Loading…
Change UMI metrics reporting
#25 by dufeiyu was merged Apr 14, 2022 Loading…
CoPath took over the data transfer
#100 by dufeiyu was merged Dec 19, 2023 Loading…
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