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Pull requests: genome/cle-myeloseqhd

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Pull requests list

CoPath took over the data transfer
#100 by dufeiyu was merged Dec 19, 2023 Loading…
Upgrade to dragen v4.2.4
#99 by dufeiyu was merged Dec 18, 2023 Loading…
Fix another bug of division by zero
#98 by dufeiyu was merged Oct 13, 2023 Loading…
Replace RIS local docker images, code improvement, bug fix and launcher update
#97 by dufeiyu was merged Oct 12, 2023 Loading…
corrected bug in read-based filtering
#96 by dhspence was merged Oct 11, 2023 Loading…
Use MSHDRepo, launcher script update and QC metrics change
#95 by dufeiyu was merged Aug 3, 2023 Loading…
updated dragen filtering
#94 by dhspence was merged Aug 2, 2023 Loading…
added -m none to bcftools combine variants command
#93 by dhspence was merged Aug 1, 2023 Loading…
added compare script
#92 by dhspence was merged Jun 29, 2023 Loading…
Update json with the correct repo path and new dragen-2 queue
#91 by dufeiyu was merged Jun 21, 2023 Loading…
Update dragen demux setting for trim purpose
#90 by dufeiyu was merged Jun 16, 2023 Loading…
Fix syntax error
#89 by dufeiyu was merged Jun 10, 2023 Loading…
Add MyeloSeqHDRepo to alt json
#88 by dufeiyu was merged Jun 9, 2023 Loading…
Remove temp file
#87 by dufeiyu was merged Jun 8, 2023 Loading…
Resolve the conflicts and some other changes
#86 by dufeiyu was merged Jun 8, 2023 Loading…
added blacklist variants, reverted trim_ends
#85 by dhspence was merged Jun 8, 2023 Loading…
Need copy demux reads from local staging drive of dragen node to scratch1
#84 by dufeiyu was merged Apr 22, 2023 Loading…
Read trimmer options and UMI options can not co-exist for dragen 4.0.3 align command line
#83 by dufeiyu was merged Apr 22, 2023 Loading…
added 1 base trimming step
#82 by dhspence was merged Apr 22, 2023 Loading…
Make workflow compatible for dragen-3/4 and turn on --qc-coverage-ignore-overlaps in dragen align
#81 by dufeiyu was merged Mar 23, 2023 Loading…
updates to filterHaloplex and Analysis WDL
#80 by dhspence was merged Mar 23, 2023 Loading…
Removed StrandBias filter
#79 by dhspence was merged Mar 9, 2023 Loading…
Minor updates for coverageBed and launcher.pl
#78 by dufeiyu was merged Jan 31, 2023 Loading…
Disabled triallelic filter in dragen command.
#74 by dhspence was merged Sep 19, 2022 Loading…
Removed fail for low coverage prior variants
#73 by dhspence was merged Sep 13, 2022 Loading…
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