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Issues list

How to train deepvariant v1.6.1 on tpu?
#841 by gambalab was closed Jun 30, 2024
1
training on google engine
#837 by gambalab was closed Jun 25, 2024
2
Error encountered while running on downsampled BAM
#833 by snakesch was closed Jun 26, 2024
@kishwarshafin
3
training with multi-gpu
#832 by gambalab was closed Jun 18, 2024
2
A timeout error occurs
#831 by sunqiangzai was closed Jun 28, 2024
@pichuan
2
docker: invalid reference format.
#829 by Jyoti-Mridha was closed Jun 12, 2024
6
Use haplotagged bam file with WES model type
#828 by eaooms was closed Jun 12, 2024
@akolesnikov
6
any progress on somatic SNV calling?
#827 by proukakis was closed Jun 10, 2024
1
gvcf with true depth and not (only) min_dp
#826 by ESDeutekom was closed Jun 10, 2024
5
Fix male VCF after calling without --haploid_contigs="chrX,chrY" and/or --par_regions_bed parameters
#825 by NourMarzouka was closed Jun 10, 2024
2
Error while using deepvariant with a bam file that is phased
#823 by eaooms was closed May 22, 2024
4
error while running deepvariant with a bam file with phasing information
#822 by eaooms was closed May 21, 2024
Info ONT R10.4.1 data
#821 by gambalab was closed May 14, 2024
3
CUDA_ERROR_NO_DEVICE: no CUDA-capable device is detected
#820 by kunmonster was closed Jun 13, 2024
@pichuan
9
Issues with Incompatible TensorRT libraries in docker image google/deepvariant:latest-gpu and google/deepvariant:1.6.1-gpu
#819 by nlopez94 was closed May 11, 2024
9
postprocess_variants: Found multiple file patterns in input filename space
#818 by MiWitt was closed Jun 10, 2024
@kishwarshafin
8
[E::vcf_parse_format] Incorrect number of FORMAT fields at NC_059157.1:24900
#817 by ilalab was closed May 8, 2024
2
haploid contigs and PAR region options for DeepTrio
#816 by prasundutta87 was closed May 15, 2024
13
Merging vcf files error with glnexus:v1.2.7
#815 by poddarharsh15 was closed May 15, 2024
6
Question about the time it takes for VC analysis
#814 by bkurtoglu was closed May 3, 2024
@kishwarshafin
5
question for INDEL variant calling
#813 by sophienguyen01 was closed May 7, 2024
@kishwarshafin
14
Dynamic cast failed
#812 by Carl-labhub was closed May 9, 2024
@pichuan
6
Output files are missing after running deepvariant.
#810 by githubtefo was closed May 15, 2024
10
Highest mapping quality = 42 in bowtie2
#809 by Wenfei-Xian was closed Apr 24, 2024
3
How to get list of variants after make_examples step?
#808 by sophienguyen01 was closed Apr 17, 2024
1
ProTip! What’s not been updated in a month: updated:<2024-06-01.