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Bottom-up dynamical modeling of biological systems using ordinary, partial, and stochastic differential equations.

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karthik-d/dynamical-modeling-of-biological-systems

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Dynamical Modeling of Biological Systems

Cell-Cycle Oscillator and Mitotic Trigger Wave-driven Spatiotemporal Coordination

Experiments and Analyses

  • EX09: One-dimensional diffusion analysis.

  • PS01: Protein Phosphorylation Switch.
  • PS02: Collin's Switch.
  • PS03: Hudspeth's Hair Bundle Oscillations.
  • PS04: Quality of Stochastic Oscillations (simulated using Gillespie's Algorithm).
  • PS05: Turing Systems.