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bonito Public
Forked from nanoporetech/bonitoConvolution Basecaller for Oxford Nanopore Reads
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GLnexus Public
Forked from dnanexus-rnd/GLnexusScalable gVCF merging and joint variant calling for population sequencing projects
C++ Apache License 2.0 UpdatedMar 13, 2024 -
pepper Public
PEPPER-Margin-DeepVariant
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kishwarshafin.github.io Public
Kishwar's personal website
HTML BSD 3-Clause "New" or "Revised" License UpdatedJun 4, 2023 -
T2T_polishing_scripts Public
Scripts used for polishing T2T assembly
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helen Public
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
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signalAlign Public
Forked from UCSC-nanopore-cgl/signalAlignHMM-HDP models for MinION signal alignments
C MIT License UpdatedNov 18, 2019 -
pomoxis Public
Forked from nanoporetech/pomoxisAnalysis components from Oxford Nanopore Research
Python Other UpdatedOct 3, 2019 -
pipelines Public
Forked from UCSC-Treehouse/dngds-pipelinesMakefile Apache License 2.0 UpdatedAug 23, 2019 -
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friday_scripts Public
This repository is the supplementary material for FRIDAY.
Shell UpdatedJan 24, 2019 -
napper Public
N.A.P.P.E.R - Nanopore Alignment Pre-processing Pipeline using Encoded Runlength
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mqvg Public
Logistic regression approach for better estimation of mapping quality produced by vg.
Python MIT License UpdatedJun 15, 2017