navbar reorganized with dropdown "Python package" tab

luponzo86 · Aug 16, 2019 · dd51382 · dd51382
1 parent dfb4758
commit dd51382
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Showing 6 changed files with 72 additions and 38 deletions.
diff --git a/about.php b/about.php
@@ -7,7 +7,7 @@
 
 <body>
   <?php
-    $currentPage = 'About';
+    $currentPage = 'about';
     include './html/navbar.php';
   ?>
 
@@ -29,8 +29,17 @@
           significance of missense variants </i><br>
         </a>
         Luca Ponzoni, Ivet Bahar <br>
-        <small>Proceedings of the National Academy of Sciences Apr 2018,
-        115 (16) 4164-4169; DOI: 10.1073/pnas.1715896115 </small>
+        <small>PNAS Apr 2018, 115 (16) 4164-4169;
+          DOI: 10.1073/pnas.1715896115 </small>
+        </p>
+
+        <p>
+        <a href="https://www.biorxiv.org/content/10.1101/737429v1" target="_blank">
+          <i>[preprint] Rhapsody: Pathogenicity prediction of human missense variants
+            based on protein sequence, structure and dynamics</i><br>
+        </a>
+        Luca Ponzoni, Zoltan N. Oltvai, Ivet Bahar <br>
+        <small>bioRxiv Aug 2019, 737429; DOI: 10.1101/737429 </small>
         </p>
 
         <h5>other:</h5>

diff --git a/batch_query.php b/batch_query.php
@@ -8,7 +8,7 @@
 <body>
 
 <?php
-  $currentPage = 'Batch query';
+  $currentPage = 'batch_query';
   include './html/navbar.php';
 ?>
 

diff --git a/download.php b/download.php
@@ -8,7 +8,7 @@
 <body>
 
   <?php
-    $currentPage = 'Download';
+    $currentPage = 'Py_package';
     include './html/navbar.php';
   ?>
 

diff --git a/html/navbar.php b/html/navbar.php
@@ -6,41 +6,66 @@
     <span class="navbar-toggler-icon"></span>
   </button>
 
-  <div class="collapse navbar-collapse" id="myNavBar">
-    <ul class="navbar-nav mr-auto">
-<?php
 
-  $urls = [
-    'Saturation mutagenesis' => 'href="sat_mutagen.php"',
-    'Batch query'   => 'href="batch_query.php"',
-    'Retrieve jobs' => 'href="retrieve_jobs.php"',
-    'Docs'      => 'href="https://rhapsody.readthedocs.io/en/latest/"'.
-                   ' target="_blank"',
-    'Tutorials' => 'href="https://nbviewer.jupyter.org/github/luponzo86/'.
-                   'rhapsody-tutorials/tree/master/tutorials" target="_blank"',
-    'Download'  => 'href="download.php"',
-    'About'     => 'href="about.php"',
+<?php
+  $a = [
+    'sat_mutagen' => ['', ''],
+    'batch_query' => ['', ''],
+    'retrieve_jobs' => ['', ''],
+    'Py_package' => ['', ''],
+    'about' => ['', ''],
   ];
+  $a[$currentPage] = ['active', '<span class="sr-only">(current)</span>']
+?>
 
-  foreach ($urls as $name => $url) {
-    // break between left and right tabs
-    if ($name === 'Docs') {
-      echo '</ul><ul class="navbar-nav navbar-right">' . "\r\n" ;
-    }
-    // single tab
-    if ($currentPage === $name) {
-      echo '<li class="nav-item active">' .
-           '<a class="nav-link" ' . $url . '>' . $name .
-           '<span class="sr-only">(current)</span></a></li>' . "\r\n";
-    }
-    else {
-      echo '<li class="nav-item">' .
-           '<a class="nav-link" ' . $url . '>' . $name .
-           '</a></li>' . "\r\n";
-    }
-  }
+  <div class="collapse navbar-collapse" id="myNavBar">
 
-?>
+    <!-- left navbar -->
+    <ul class="navbar-nav mr-auto">
+      <li class="nav-item <?php echo $a['sat_mutagen'][0]?>">
+        <a class="nav-link" href="sat_mutagen.php">Saturation mutagenesis
+          <?php echo $a['sat_mutagen'][1]?>
+        </a>
+      </li>
+      <li class="nav-item <?php echo $a['batch_query'][0]?>">
+        <a class="nav-link" href="batch_query.php">Batch query
+          <?php echo $a['batch_query'][1]?>
+        </a>
+      </li>
+      <li class="nav-item <?php echo $a['retrieve_jobs'][0]?>">
+        <a class="nav-link" href="retrieve_jobs.php">Retrieve jobs
+          <?php echo $a['retrieve_jobs'][1]?>
+        </a>
+      </li>
+    </ul>
+
+    <!-- right navbar -->
+    <ul class="navbar-nav navbar-right">
+      <li class="nav-item dropdown <?php echo $a['Py_package'][0]?>">
+        <a class="nav-link dropdown-toggle" href="#" id="dropdownID"
+          data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">
+          Python package <?php echo $a['Py_package'][1]?>
+        </a>
+        <div class="dropdown-menu" aria-labelledby="dropdownID">
+          <a class="dropdown-item" href="download.php">
+            Download
+          </a>
+          <a class="dropdown-item"
+            href="https://nbviewer.jupyter.org/github/luponzo86/rhapsody-tutorials/tree/master/tutorials"
+            target="_blank">
+            Tutorials
+          </a>
+          <a class="dropdown-item" href="https://rhapsody.readthedocs.io/en/latest/"
+            target="_blank">
+            Docs
+          </a>
+        </div>
+      </li>
+      <li class="nav-item <?php echo $a['about'][0]?>">
+        <a class="nav-link" href="about.php">About
+          <?php echo $a['about'][1]?>
+        </a>
+      </li>
     </ul>
   </div>
 </nav>

diff --git a/retrieve_jobs.php b/retrieve_jobs.php
@@ -8,7 +8,7 @@
 <body>
 
   <?php
-    $currentPage = 'Retrieve jobs';
+    $currentPage = 'retrieve_jobs';
     include './html/navbar.php';
   ?>
 

diff --git a/sat_mutagen.php b/sat_mutagen.php
@@ -8,7 +8,7 @@
 <body>
 
   <?php
-    $currentPage = 'Saturation mutagenesis';
+    $currentPage = 'sat_mutagen';
     include './html/navbar.php';
   ?>