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@lescailab

Lescai Lab

Computational Genomics

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  1. rnaseq-docker-rstudio rnaseq-docker-rstudio Public

    Shell 1

  2. viralevo viralevo Public

    Forked from nibscbioinformatics/viralevo

    Nextflow

  3. scoop scoop Public

    Forked from nibscbioinformatics/scoop

    Another metagenomics pipeline with a cookery name. The pipeline is based on read classification (i.e. no assembly) and uses biobakery tools.

    Nextflow

  4. nanoprofiler nanoprofiler Public

    Forked from nibscbioinformatics/nanoprofiler

    Profiling Nanobodies sequencing libraries

    HTML

  5. scranger scranger Public

    Forked from nibscbioinformatics/scranger

    scRNAseq Pipeline running Cell Ranger and Seurat

    Nextflow

  6. hpc_guide hpc_guide Public

    Forked from nibscbioinformatics/hpc_guide

    Sphinx documentation to NIBSC HPC

    Python

Repositories

Showing 10 of 27 repositories
  • nanorepertoire Public
    lescailab/nanorepertoire’s past year of commit activity
    Nextflow 0 MIT 1 0 0 Updated Jul 23, 2024
  • rnaseq-docker-rstudio Public
    lescailab/rnaseq-docker-rstudio’s past year of commit activity
    Shell 1 MIT 0 0 0 Updated Jul 22, 2024
  • testdata Public Forked from nibscbioinformatics/testdata

    small dataset used to run nextflow pipelines tests

    lescailab/testdata’s past year of commit activity
    0 4 0 0 Updated Jul 4, 2024
  • variantsimulator Public
    lescailab/variantsimulator’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Jun 19, 2024
  • sarek-devel Public Forked from nf-core/sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

    lescailab/sarek-devel’s past year of commit activity
    Nextflow 0 MIT 392 0 0 Updated Jun 19, 2024
  • epiresimR Public

    epiresim version translated in R

    lescailab/epiresimR’s past year of commit activity
    R 0 0 0 0 Updated Feb 14, 2024
  • hgtseq_tools Public

    repository with developing code for hgtseq pipeline

    lescailab/hgtseq_tools’s past year of commit activity
    R 0 0 0 0 Updated Jul 20, 2023
  • container_deeplearning Public

    container for deep learning analyses

    lescailab/container_deeplearning’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Jun 20, 2023
  • hpc_guide Public Forked from nibscbioinformatics/hpc_guide

    Sphinx documentation to NIBSC HPC

    lescailab/hpc_guide’s past year of commit activity
    Python 0 3 0 0 Updated May 8, 2023
  • hgt_blacklist Public
    lescailab/hgt_blacklist’s past year of commit activity
    0 0 0 0 Updated Mar 24, 2023
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