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149 Open 949 Closed
149 Open 949 Closed
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Issues list

Nanopore R9.4 and R9.10
#1004 opened Dec 21, 2022 by Aline-Git
1
truncated sam file with limited lines after minimap2
#1003 opened Dec 20, 2022 by liqiaolin15
the value of ez->mte_q
#993 opened Nov 27, 2022 by baoxingsong
cross-species full-genome alignment
#986 opened Nov 16, 2022 by michaeljmetzger
junc-bed in mappy enhancement
#982 opened Nov 9, 2022 by loganylchen
2
Recover missing alignment
#979 opened Oct 30, 2022 by tbenavi1
1
Alignment with Band Initialization
#976 opened Oct 26, 2022 by joydddd
Allow any nucleotide to map to a specific location question
#973 opened Oct 20, 2022 by meng-lab
7
Bug in all-vs-all modes when -c is turned on
#969 opened Oct 13, 2022 by kmnip
Missmapping of small exon
#968 opened Oct 12, 2022 by smf96
1
About minimap2 result
#967 opened Oct 12, 2022 by Flower9618
paftools.js misjoin
#966 opened Oct 7, 2022 by GuillaumeHolley
Unknown option bug
#963 opened Oct 5, 2022 by yzhang-github-pub
2
hard clipping around large indels, parameter suggestions question
#960 opened Sep 27, 2022 by rob234king
4
Guidance for divergent assembly-assembly alignment
#958 opened Sep 1, 2022 by jdwinkler-lanzatech
minimap2
#956 opened Aug 28, 2022 by duhuipeng
With/without unscaffolded contigs has different alignment results
#954 opened Aug 19, 2022 by justdx
Feature Request: Compress Index When Saving feature-request
#951 opened Aug 14, 2022 by schorlton
3
Documentation: Limitations "small exons" question
#948 opened Aug 3, 2022 by husamia
4
Documentation Request for paftools.js 'call'
#945 opened Jul 28, 2022 by cassondranewman
minimap 2.24-r1122 Segmentation fault
#935 opened Jul 6, 2022 by twang15
short reads align to the assembled contig
#918 opened May 27, 2022 by MonaLiu421
2
CIGAR and query sequence are of different length after mapping
#904 opened Apr 22, 2022 by Estherrr1997
1
Parameters for Illumina 2*500bp PE reads
#899 opened Apr 11, 2022 by ksahlin
minimap2: align.c:125: mm_fix_cigar: Assertion `qoff == r->qe - r->qs && toff == r->re - r->rs' failed.
#859 opened Jan 13, 2022 by jia-wu-feng
7
ProTip! What’s not been updated in a month: updated:<2024-06-01.