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@parklab

Park Lab at Harvard Medical School

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  1. nozzle nozzle Public

    Nozzle is a report generation toolkit for data analysis pipelines implemented in R.

    R 68 22

  2. NGSCheckMate NGSCheckMate Public

    Software program for checking sample matching for NGS data

    Python 121 47

  3. emsar emsar Public

    EMSAR quantifies transcripts from RNA-seq data (Citation : Lee et al., BMC Bioinformatics 2015, 16:278, http://www.biomedcentral.com/1471-2105/16/278)

    C 8 1

Repositories

Showing 10 of 36 repositories
  • xTea Public

    Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

    parklab/xTea’s past year of commit activity
    Python 87 19 8 3 Updated Jun 27, 2024
  • NGSCheckMate Public

    Software program for checking sample matching for NGS data

    parklab/NGSCheckMate’s past year of commit activity
    Python 121 MIT 47 26 3 Updated Jun 20, 2024
  • SCAN2 Public

    SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)

    parklab/SCAN2’s past year of commit activity
    Python 10 5 11 0 Updated Jun 19, 2024
  • MuSiCal Public

    A comprehensive toolkit for mutational signature analysis

    parklab/MuSiCal’s past year of commit activity
    Python 27 4 0 0 Updated Jun 13, 2024
  • r-scan2 Public

    R package supporting the SCAN2 pipeline

    parklab/r-scan2’s past year of commit activity
    R 0 3 0 0 Updated May 22, 2024
  • Salamander Public

    Salamander is a non-negative matrix factorization framework for signature analysis

    parklab/Salamander’s past year of commit activity
    Python 8 MIT 0 0 0 Updated May 16, 2024
  • MSIprofiler Public

    Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data

    parklab/MSIprofiler’s past year of commit activity
    Python 20 4 0 3 Updated Apr 22, 2024
  • HiScanner Public
    parklab/HiScanner’s past year of commit activity
    C 3 MIT 0 0 0 Updated Apr 11, 2024
  • code-share Public

    Repository to host shared code for the lab

    parklab/code-share’s past year of commit activity
    Shell 0 0 0 0 Updated Mar 12, 2024
  • luquette-glia-analysis Public

    Scripts for the glia project

    parklab/luquette-glia-analysis’s past year of commit activity
    R 0 0 0 0 Updated Mar 6, 2024
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