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Float division by zero #17

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tstricker opened this issue Jul 26, 2018 · 2 comments
Open

Float division by zero #17

tstricker opened this issue Jul 26, 2018 · 2 comments

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@tstricker
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I know this has come up twice before, but neither case appears to apply to me. I can't figure out this error.

Generate Data Set from /data/strickt2/desmoid2/sequence/readgroup/raw.vcf/
using this bed file : /home/strickt2/SEQanalysis/NGSCheckMate/SNP/SNP_GRCh37_hg19_wChr.bed
Traceback (most recent call last):
File "/home/strickt2/SEQanalysis/NGSCheckMate/ncm.py", line 1460, in
createDataSetFromDir(base_dir,bedFile)
File "/home/strickt2/SEQanalysis/NGSCheckMate/ncm.py", line 220, in createDataSetFromDir
real_depth[file] = depth[file] / float(real_count[file])
ZeroDivisionError: float division by zero
@sejooning
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Hi tstricker,

The NGSCheckMate supports below VCF files.

  1. Single-sample VCF files from samtools and GATK's.
  2. A Multi-samples VCF file (GATK).

Otherwise, could you please share your VCF files? I would like to check the details.

Best,
Sejoon Lee

@tstricker
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tstricker commented Jul 30, 2018 via email

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@tstricker @sejooning