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DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Location of public benchmarking; primarily final results
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
Strelka2 germline and somatic small variant caller
Python and C++ code for reading and writing genomics data.
CoreNLP: A Java suite of core NLP tools for tokenization, sentence segmentation, NER, parsing, coreference, sentiment analysis, etc.
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