Add tests/A14_filter

prophyle · salikhov-kamil · Aug 2, 2018 · Aug 2, 2018 · Oct 25, 2018 · Oct 25, 2018
commit 4017cd9bce98d4a1b42857a18ae5cb2f4a3a7f58
diff --git a/tests/A14_filter/Makefile b/tests/A14_filter/Makefile
@@ -0,0 +1,25 @@
+include ../conf.mk
+
+K=12
+M=0.0 0.1 0.5 1.0
+N=1 5 10
+
+.PHONY: all clean $(M) $(N)
+
+all: $(addprefix m,$M) $(addprefix n,$N)
+
+m%: _index.%.complete
+	$(IND) filter -k $(K) -u -m $* _index.$*.fa $(FQ) > _obtained.$*.txt
+	diff -c _obtained.$*.txt expected.$*.txt
+
+n%: _index.%.complete
+	$(IND) filter -k $(K) -u -n $* _index.$*.fa $(FQ) > _obtained.$*.txt
+	diff -c _obtained.$*.txt expected.$*.txt
+
+_index.%.complete:
+	$(BWA) index -p _index.$*.fa $(FA)
+	$(IND) klcp -k $(K) _index.$*.fa
+	touch $@
+
+clean:
+	rm -f _*
diff --git a/tests/A14_filter/expected.0.0.txt b/tests/A14_filter/expected.0.0.txt
diff --git a/tests/A14_filter/expected.0.1.txt b/tests/A14_filter/expected.0.1.txt
diff --git a/tests/A14_filter/expected.0.5.txt b/tests/A14_filter/expected.0.5.txt
diff --git a/tests/A14_filter/expected.1.0.txt b/tests/A14_filter/expected.1.0.txt
diff --git a/tests/A14_filter/expected.1.txt b/tests/A14_filter/expected.1.txt
diff --git a/tests/A14_filter/expected.10.txt b/tests/A14_filter/expected.10.txt
diff --git a/tests/A14_filter/expected.5.txt b/tests/A14_filter/expected.5.txt