This repository contains source code from our participation in the n2c2 2018 shared-task (Track 1).
Ubuntu, Python 3.6.4. Install the required packages:
$ pip install -r requirements.txt
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Place the n2c2 dataset into the data/n2c2/ directory.
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Input parameters can be modified in the src/system.py script.
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In the src/ directory run:
$ python3 system.py
If you use this code in your work, please cite our publication:
@inproceedings{antunes2019a,
address = {{Prague, Czech Republic}},
author = {Antunes, Rui and Silva, Jo{\~a}o Figueira and Pereira, Arnaldo and Matos, S{\'e}rgio},
booktitle = {12th {{International Joint Conference}} on {{Biomedical Engineering Systems}} and {{Technologies}}},
month = feb,
pages = {59--67},
publisher = {{SciTePress}},
title = {Rule-based and machine learning hybrid system for patient cohort selection},
url = {https://doi.org/10.5220/0007349300590067},
year = {2019},
}