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Issues list

Tutorial problem "'GCA_000008285.1_ASM828v1_genomic.fna' is not a readable non-empty FASTA file"
#597 by Turnerathopedotedu was closed Apr 27, 2023
MSG: Got a sequence without letters. Could not guess alphabet
#586 by augustkx was closed Jan 8, 2023
Get a wrong core_gene_alignment.aln
#584 by augustkx was closed Nov 29, 2022
1
Roary not working
#583 by KFWins2022 was closed Nov 29, 2022
5
core_gene_alignment file only seems to have 2 of 21 samples
#582 by Barrington-wustl was closed Nov 29, 2022
1
Question about the fasta cluster iteratively
#581 by bucongfan was closed Nov 29, 2022
1
Should assemblies be removed if core gene alignment shows redundancies?
#580 by chahatupreti was closed Nov 29, 2022
1
core_gene_alignment.newick
#570 by valery-shap was closed Apr 4, 2023
1
Using Galaxy for Roary
#567 by Jennifer-1991 was closed Apr 22, 2022
1
Roary Unable to Install on Remote Linux Server with SLURM manager
#558 by callaband was closed Mar 16, 2022
4
Blast percentage identity
#543 by Virome1 was closed Sep 30, 2021
roary_plots.py download/clone
#531 by sharbie88 was closed Apr 10, 2021
can't open roary_plots
#530 by sharbie88 was closed Apr 8, 2021
No sequence data in core_gene_alignment.aln
#526 by haruosuz was closed Mar 1, 2021
1
Can´t open file: proteome.faa
#519 by mdiricks was closed Jan 25, 2022
1
is roary only for strains from the same species?
#514 by limin321 was closed Sep 26, 2020
3
problem with conda install
#499 by vjmorley was closed Apr 6, 2020
5
detection of cd-hit version
#480 by thkuo was closed Oct 7, 2020
5
"roary" running time benchmark
#479 by npavlovikj was closed Oct 26, 2020
8
Extracting Shell/Cloud gene sequences (DNA sequences)
#477 by noahaus was closed Nov 26, 2019
2
Few core genes, a big number of total genes
#474 by gundizalv was closed Nov 12, 2019
3
Missing one input in gene_presence_absence.csv
#472 by jackchen129 was closed Nov 6, 2019
3
Strange error
#467 by gundizalv was closed Oct 17, 2019
5
Empty core_gene_alignment.aln with normal pan-genome
#466 by therealcooperpark was closed Nov 11, 2019
2
Input .gff files size and number
#463 by npavlovikj was closed Oct 1, 2019
2
ProTip! What’s not been updated in a month: updated:<2024-06-03.