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Issues: scverse/scanpy

Rename master -> main
#2869 by ivirshup was closed Feb 23, 2024
Closed 4
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Issues list

Tests fail with pytest 8.1 when a data dir exists Bug 🐛
#2993 by ivirshup was closed Apr 29, 2024
1 task
1.10.2
2
13
"Segmentation fault (core dumped)" Error for step "sc.pp.neighbors"
#2361 by JuneMeng was closed Jan 25, 2024
13
KeyError: 'base' when running tl.rank_genes_groups
#2239 by naity2 was closed Jun 7, 2023
3 tasks done
2
13
Plotting categorical data throws an error Bug 🐛
#1850 by karlann was closed Jun 18, 2021
2 of 3 tasks
@ivirshup
13
Gene Names/Identities are showing up as numbers when plotted with highest_expr_genes()
#914 by ArcusGears was closed Nov 13, 2019
13
ValueError with sc.pp.highly_variable_genes with pandas 0.24
#450 by fbnrst was closed Jan 29, 2019
13
Plot of ranked genes groups with non-raw data or layers
#438 by SamueleSoraggi was closed Mar 4, 2019
13
sc.pl.stacked_violin: IndexError, list index out of range
#405 by JuHey was closed Jan 27, 2021
1
13
Documentation request: Violin plot example (cell-group based)
#85 by jorvis was closed Apr 11, 2018
13
Problem adding sample annotation by pd.dataframe
#74 by elimereu was closed Feb 12, 2018
13
How to find the optimal k?
#25 by yang-william was closed Sep 13, 2017
13
sc.tl.ingest: pkg_version does not work with anndata==0.10.6 Bug 🐛 Installation Needs info❔ More information needed
#2978 by maarten-devries was closed Apr 8, 2024
3 tasks done
12
why scale is not in spatial Area - Documentation 📒 Question
#2963 by asmlgkj was closed Apr 8, 2024
2 of 3 tasks
12
sc.datasets.pbmc3k() link no longer exists
#2124 by jacobkimmel was closed Jan 4, 2023
3 tasks done
12
plotting data horizontal plots with shared axis Area - Plotting 🌺 Bug 🐛 good first issue easy first issue to get started in OSS community contribution!
#1486 by rbf22 was closed Nov 11, 2020
1 task
12
Improve documentation for developers Development Process 🚀 Enhancement ✨
#1419 by WeilerP was closed Jun 29, 2021
12
Exporting raw data in CSV
#506 by tsotnech was closed Mar 1, 2019
12
Read multiple 10X files
#267 by cartal was closed Sep 26, 2018
12
Connectivity measure and spurious edges in AGA Question
#96 by yueqiw was closed Jan 25, 2021
12
sc.pl.spatial TypeError: can't multiply sequence by non-int of type 'float' Area - IO Reading and writing Area – Spatial 🗺
#2499 by meaksu was closed Jun 26, 2023
11
how to plot cell types, medication per cohort in one figure Enhancement ✨
#1824 by FADHLyemen was closed Oct 28, 2021
1 of 5 tasks
@Zethson
11
Enable GPU accelerated CI Jobs Enhancement ✨
#1793 by Zethson was closed Apr 5, 2024
6 tasks
@Zethson
11
How can i replace the adata's X_umap coordinate with seurat's umap coordinate Question
#1718 by honghh2018 was closed Apr 10, 2024
11
Mismatching cluster color codes in sc.pl.heatmap Area - Plotting 🌺 good first issue easy first issue to get started in OSS community contribution!
#1479 by wkopp was closed Dec 11, 2020
2 of 3 tasks
1
11
scanpy.pl.spatial does not work properly in plt.subplots Area - Plotting 🌺 Bug 🐛
#1158 by linanzhang was closed Jun 8, 2020
@giovp
11
ProTip! What’s not been updated in a month: updated:<2024-06-10.