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Issues: scverse/scanpy

Rename master -> main
#2869 by ivirshup was closed Feb 23, 2024
Closed 4
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Issues list

Problem when plotting 'C3' gene expression
#232 by fbrundu was closed Jan 24, 2021
10
Where can I find log-fold change in gene expression for the markers
#159 by DoruMP was closed Jan 24, 2021
10
Allow plotting genes not used in a dimension reduction Enhancement ✨
#41 by wangjiawen2013 was closed Jan 1, 2018
10
psutil error
#35 by hkoohy was closed Aug 24, 2017
10
Plotting with using scanpy.pl gives attribute error. Bug 🐛
#2680 by Kiliankleemann was closed Nov 13, 2023
2 of 3 tasks
1
@eroell
9
Tansfering data integration fom scanorama to a new dataset Question
#2162 by aliechoes was closed Mar 8, 2022
9
module 'umap' has no attribute '__version__'
#1978 by spoookyghost was closed Nov 8, 2021
9
Questions about running ingest now
#1951 by HelloWorldLTY was closed Jul 26, 2021
9
Multiplex community detection with Leiden Enhancement ✨
#1818 by giovp was closed Apr 17, 2024
1 of 5 tasks
9
scanpy doesn't plot labels in UMAP Bug 🐛 Needs info❔ More information needed
#1701 by cartal was closed Mar 12, 2021
9
UMAP plotting can not properly colour np.nan values in categorical obs Area - Plotting 🌺 Bug 🐛
#1355 by Hrovatin was closed Aug 25, 2020
2 of 3 tasks
1
9
The legend overlap with figures in plot function Bug 🐛
#1312 by YubinXie was closed Jul 31, 2020
9
End to end workflows on GPU Enhancement ✨
#1177 by cjnolet was closed Apr 5, 2024
1 of 5 tasks
9
When using umap with init_pos=paga, got strange result Needs info❔ More information needed
#918 by dhtc was closed Oct 18, 2023
9
filter_rank_genes_groups fold change calculation Area – Differential Expression Differential expression
#863 by coh-racng was closed Jan 4, 2023
@fidelram
9
sc.tl.rank_genes_groups() for same cluster but different batch Needs info❔ More information needed
#838 by grimwoo was closed Sep 18, 2019
9
"invalid shape in fixed-type tuple" when saving adata after ranking genes
#832 by dylkot was closed Nov 25, 2019
1
9
It seems that igraph project changed its name
#807 by biubiu-1 was closed Sep 2, 2019
9
Merge dataset workflow?
#702 by Seandelao was closed Jun 25, 2019
9
macOS matplotlib error
#567 by kt6k was closed Jan 4, 2023
9
Cannot import scanpy in jupyter notebook with python 3.5.2
#561 by ontsilla was closed Apr 2, 2019
9
Plotting the expressions of several markers on a single UMAP plot Question
#532 by ParisaMa was closed Nov 13, 2019
9
Log2 fold changes in rank_genes_groups are calculated from log-transformed data Area – Differential Expression Differential expression
#517 by a-munoz-rojas was closed Jan 24, 2021
9
Reading h5ad with backed='r' does not reduce memory usage
#434 by sherman5 was closed Jan 26, 2019
9
How to use stacked_violin with variable y-axis limits between rows?
#386 by pritykin was closed Dec 12, 2018
9
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