v2.8.2

shenwei356 · May 17, 2024 · 1aef84f · 1aef84f
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,11 +1,11 @@
-- [SeqKit v2.8.2](https://github.com/shenwei356/seqkit/releases/tag/v2.8.2) - 2024-04-07
+- [SeqKit v2.8.2](https://github.com/shenwei356/seqkit/releases/tag/v2.8.2) - 2024-05-17
 [![Github Releases (by Release)](https://img.shields.io/github/downloads/shenwei356/seqkit/v2.8.2/total.svg)](https://github.com/shenwei356/seqkit/releases/tag/v2.8.2)
     - `seqkit amplicon`:
         - Fix a big introduced in v2.7.0. When more than one pairs of primers are given, only the last one is used. [#457](https://github.com/shenwei356/seqkit/issues/457)
     - `seqkit translate`:
         - Add option `-e/--skip-translate-errors` to skip translate error and output empty sequence. [#458](https://github.com/shenwei356/seqkit/pull/458)
     - `seqkit split`:
-        - Add flag `--ignore-case` for `-i/--by-id`. [#462](https://github.com/shenwei356/seqkit/issues/462)
+        - Add flag `-I/--ignore-case` for `-i/--by-id`. [#462](https://github.com/shenwei356/seqkit/issues/462)
 - [SeqKit v2.8.1](https://github.com/shenwei356/seqkit/releases/tag/v2.8.1) - 2024-04-07
 [![Github Releases (by Release)](https://img.shields.io/github/downloads/shenwei356/seqkit/v2.8.1/total.svg)](https://github.com/shenwei356/seqkit/releases/tag/v2.8.1)
     - `seqkit sana`:

diff --git a/doc/docs/download.md b/doc/docs/download.md
@@ -13,25 +13,29 @@ Please cite:
 
 ## Current Version
 
-- [SeqKit v2.8.1](https://github.com/shenwei356/seqkit/releases/tag/v2.8.1) - 2024-04-07
-[![Github Releases (by Release)](https://img.shields.io/github/downloads/shenwei356/seqkit/v2.8.1/total.svg)](https://github.com/shenwei356/seqkit/releases/tag/v2.8.1)
-    - `seqkit sana`:
-        - Add support for FASTQ files with IDs in the separator (`+`, 3rd) lines.. [#446](https://github.com/shenwei356/seqkit/pull/446), [#429](https://github.com/shenwei356/seqkit/issues/429), [#408](https://github.com/shenwei356/seqkit/issues/408)
-    - `seqkit subseq`:
-        - Add some docs to show how to keep the original order of sequences when extracting with BED: compress the input FASTA file. [#451](https://github.com/shenwei356/seqkit/issues/451)
+- [SeqKit v2.8.2](https://github.com/shenwei356/seqkit/releases/tag/v2.8.2) - 2024-05-17
+[![Github Releases (by Release)](https://img.shields.io/github/downloads/shenwei356/seqkit/v2.8.2/total.svg)](https://github.com/shenwei356/seqkit/releases/tag/v2.8.2)
+    - `seqkit amplicon`:
+        - Fix a big introduced in v2.7.0. When more than one pairs of primers are given, only the last one is used. [#457](https://github.com/shenwei356/seqkit/issues/457)
+    - `seqkit translate`:
+        - Add option `-e/--skip-translate-errors` to skip translate error and output empty sequence. [#458](https://github.com/shenwei356/seqkit/pull/458)
+    - `seqkit split`:
+        - Add flag `-I/--ignore-case` for `-i/--by-id`. [#462](https://github.com/shenwei356/seqkit/issues/462)
+
+
 
         
 ### Links
 
 OS     |Arch      |File, 中国镜像                                                                                                                                                                                  |Download Count
 :------|:---------|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
-Linux  |32-bit    |[seqkit_linux_386.tar.gz](https://github.com/shenwei356/seqkit/releases/download/v2.8.1/seqkit_linux_386.tar.gz), <br/> [中国镜像](http://app.shenwei.me/data/seqkit/seqkit_linux_386.tar.gz)                            |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_linux_386.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/seqkit/releases/download/v2.8.1/seqkit_linux_386.tar.gz)
-Linux  |**64-bit**|[**seqkit_linux_amd64.tar.gz**](https://github.com/shenwei356/seqkit/releases/download/v2.8.1/seqkit_linux_amd64.tar.gz), <br/> [中国镜像](http://app.shenwei.me/data/seqkit/seqkit_linux_amd64.tar.gz)                  |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_linux_amd64.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/seqkit/releases/download/v2.8.1/seqkit_linux_amd64.tar.gz)
-Linux  |**arm64** |[**seqkit_linux_arm64.tar.gz**](https://github.com/shenwei356/seqkit/releases/download/v2.8.1/seqkit_linux_arm64.tar.gz), <br/> [中国镜像](http://app.shenwei.me/data/seqkit/seqkit_linux_arm64.tar.gz)                  |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_linux_arm64.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/seqkit/releases/download/v2.8.1/seqkit_linux_arm64.tar.gz)
-macOS  |**64-bit**|[**seqkit_darwin_amd64.tar.gz**](https://github.com/shenwei356/seqkit/releases/download/v2.8.1/seqkit_darwin_amd64.tar.gz), <br/> [中国镜像](http://app.shenwei.me/data/seqkit/seqkit_darwin_amd64.tar.gz)               |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_darwin_amd64.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/seqkit/releases/download/v2.8.1/seqkit_darwin_amd64.tar.gz)
-macOS  |**arm64** |[**seqkit_darwin_arm64.tar.gz**](https://github.com/shenwei356/seqkit/releases/download/v2.8.1/seqkit_darwin_arm64.tar.gz), <br/> [中国镜像](http://app.shenwei.me/data/seqkit/seqkit_darwin_arm64.tar.gz)               |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_darwin_arm64.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/seqkit/releases/download/v2.8.1/seqkit_darwin_arm64.tar.gz)
-Windows|32-bit    |[seqkit_windows_386.exe.tar.gz](https://github.com/shenwei356/seqkit/releases/download/v2.8.1/seqkit_windows_386.exe.tar.gz), <br/> [中国镜像](http://app.shenwei.me/data/seqkit/seqkit_windows_386.exe.tar.gz)          |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_windows_386.exe.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/seqkit/releases/download/v2.8.1/seqkit_windows_386.exe.tar.gz)
-Windows|**64-bit**|[**seqkit_windows_amd64.exe.tar.gz**](https://github.com/shenwei356/seqkit/releases/download/v2.8.1/seqkit_windows_amd64.exe.tar.gz), <br/> [中国镜像](http://app.shenwei.me/data/seqkit/seqkit_windows_amd64.exe.tar.gz)|[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_windows_amd64.exe.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/seqkit/releases/download/v2.8.1/seqkit_windows_amd64.exe.tar.gz)
+Linux  |32-bit    |[seqkit_linux_386.tar.gz](https://github.com/shenwei356/seqkit/releases/download/v2.8.2/seqkit_linux_386.tar.gz), <br/> [中国镜像](http://app.shenwei.me/data/seqkit/seqkit_linux_386.tar.gz)                            |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_linux_386.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/seqkit/releases/download/v2.8.2/seqkit_linux_386.tar.gz)
+Linux  |**64-bit**|[**seqkit_linux_amd64.tar.gz**](https://github.com/shenwei356/seqkit/releases/download/v2.8.2/seqkit_linux_amd64.tar.gz), <br/> [中国镜像](http://app.shenwei.me/data/seqkit/seqkit_linux_amd64.tar.gz)                  |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_linux_amd64.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/seqkit/releases/download/v2.8.2/seqkit_linux_amd64.tar.gz)
+Linux  |**arm64** |[**seqkit_linux_arm64.tar.gz**](https://github.com/shenwei356/seqkit/releases/download/v2.8.2/seqkit_linux_arm64.tar.gz), <br/> [中国镜像](http://app.shenwei.me/data/seqkit/seqkit_linux_arm64.tar.gz)                  |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_linux_arm64.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/seqkit/releases/download/v2.8.2/seqkit_linux_arm64.tar.gz)
+macOS  |**64-bit**|[**seqkit_darwin_amd64.tar.gz**](https://github.com/shenwei356/seqkit/releases/download/v2.8.2/seqkit_darwin_amd64.tar.gz), <br/> [中国镜像](http://app.shenwei.me/data/seqkit/seqkit_darwin_amd64.tar.gz)               |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_darwin_amd64.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/seqkit/releases/download/v2.8.2/seqkit_darwin_amd64.tar.gz)
+macOS  |**arm64** |[**seqkit_darwin_arm64.tar.gz**](https://github.com/shenwei356/seqkit/releases/download/v2.8.2/seqkit_darwin_arm64.tar.gz), <br/> [中国镜像](http://app.shenwei.me/data/seqkit/seqkit_darwin_arm64.tar.gz)               |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_darwin_arm64.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/seqkit/releases/download/v2.8.2/seqkit_darwin_arm64.tar.gz)
+Windows|32-bit    |[seqkit_windows_386.exe.tar.gz](https://github.com/shenwei356/seqkit/releases/download/v2.8.2/seqkit_windows_386.exe.tar.gz), <br/> [中国镜像](http://app.shenwei.me/data/seqkit/seqkit_windows_386.exe.tar.gz)          |[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_windows_386.exe.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/seqkit/releases/download/v2.8.2/seqkit_windows_386.exe.tar.gz)
+Windows|**64-bit**|[**seqkit_windows_amd64.exe.tar.gz**](https://github.com/shenwei356/seqkit/releases/download/v2.8.2/seqkit_windows_amd64.exe.tar.gz), <br/> [中国镜像](http://app.shenwei.me/data/seqkit/seqkit_windows_amd64.exe.tar.gz)|[![Github Releases (by Asset)](https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_windows_amd64.exe.tar.gz.svg?maxAge=3600)](https://github.com/shenwei356/seqkit/releases/download/v2.8.2/seqkit_windows_amd64.exe.tar.gz)
 
 
 *Notes*
@@ -153,6 +157,12 @@ fish:
 
 ## Release history
 
+- [SeqKit v2.8.1](https://github.com/shenwei356/seqkit/releases/tag/v2.8.1) - 2024-04-07
+[![Github Releases (by Release)](https://img.shields.io/github/downloads/shenwei356/seqkit/v2.8.1/total.svg)](https://github.com/shenwei356/seqkit/releases/tag/v2.8.1)
+    - `seqkit sana`:
+        - Add support for FASTQ files with IDs in the separator (`+`, 3rd) lines.. [#446](https://github.com/shenwei356/seqkit/pull/446), [#429](https://github.com/shenwei356/seqkit/issues/429), [#408](https://github.com/shenwei356/seqkit/issues/408)
+    - `seqkit subseq`:
+        - Add some docs to show how to keep the original order of sequences when extracting with BED: compress the input FASTA file. [#451](https://github.com/shenwei356/seqkit/issues/451)
 - [SeqKit v2.8.0](https://github.com/shenwei356/seqkit/releases/tag/v2.8.0) - 2024-03-11
 [![Github Releases (by Release)](https://img.shields.io/github/downloads/shenwei356/seqkit/v2.8.0/total.svg)](https://github.com/shenwei356/seqkit/releases/tag/v2.8.0)
     - `seqkit stats`: