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Pull requests: shenwei356/seqkit

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Pull requests list

bam: fixed critical bug when counting records in -s
#109 by bsipos was merged Mar 3, 2020 Loading…
translate WIP - feedback request
#44 by ctava was closed Sep 18, 2018 Loading…
11
#28 adding translate
#47 by ctava was closed Sep 25, 2018 Loading…
Just a quick typo change
#73 by amblina was merged Jun 19, 2019 Loading…
1
Quick typo change
#74 by amblina was merged Jun 19, 2019 Loading…
1
new command: amplicon
#80 by shenwei356 was merged Aug 17, 2019 Loading…
Contributing new subcommands
#81 by bsipos was merged Aug 28, 2019 Loading…
1
Added tests
#85 by bsipos was merged Sep 11, 2019 Loading…
1
Added missing examples
#87 by bsipos was closed Sep 24, 2019 Loading…
2
seqkit bam: proper handling of illegal fields.
#92 by bsipos was merged Nov 9, 2019 Loading…
1
bam: added leftmost position as a field
#93 by bsipos was merged Nov 13, 2019 Loading…
bam: added the EndPos field (rightmost alignment coordinate)
#106 by bsipos was merged Feb 20, 2020 Loading…
adding support for docker
#42 by ctava was merged Sep 15, 2018 Loading…
7
bam: added flags for filtering records by read IDs.
#107 by bsipos was merged Feb 26, 2020 Loading…
2
bam: Added colorised and pretty printed output to BAM stats (-s and -i)
#110 by bsipos was merged Mar 6, 2020 Loading…
Added a sub-command for real time watching and streaming of fastx files. Rewrote sana backend.
#111 by bsipos was merged Mar 8, 2020 Loading…
4
Extended the color cycle palette with some 8-bit colors.
#112 by bsipos was merged Mar 8, 2020 Loading…
Trying to fix the handling of interrupt signal.
#113 by bsipos was merged Mar 8, 2020 Loading…
2
Added an option to colorize the output of the seq subcommand.
#114 by bsipos was merged Mar 19, 2020 Loading…
4
bam: added a BAM bundler
#117 by bsipos was merged Mar 19, 2020 Loading…
1
bam bundler: removed samtools dependency and using seqkit and csvtk instead
#118 by bsipos was merged Mar 21, 2020 Loading…
Attempting to fix OSX CI fail by using openssl to calculate MD5 sums.
#119 by bsipos was merged Mar 21, 2020 Loading…
Fixed OSX CI issues
#120 by bsipos was merged Mar 22, 2020 Loading…
2
Add a Gitter chat badge to README.md
#122 by gitter-badger was closed Mar 22, 2020 Loading…
Code clean up around error checking for translate command
#459 by khalilchatoo was closed May 5, 2024 Loading…
1
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