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An error occurs when running the latest version #81

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weiguanyue opened this issue Jun 8, 2023 · 5 comments
Closed

An error occurs when running the latest version #81

weiguanyue opened this issue Jun 8, 2023 · 5 comments

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@weiguanyue
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Report this error no matter what you're running

Describe your issue

panic: runtime error: index out of range [5] with length 5

goroutine 18 [running]:
github.com/shenwei356/taxonkit/taxonkit/cmd.stringSplitN({0xc00bf9e0a0?, 0xc000173639?}, {0x93cee8, 0x1}, 0x6?, 0xc000290e40?)
/home/shenwei/go/src/github.com/shenwei356/taxonkit/taxonkit/cmd/util.go:45 +0x1cd
github.com/shenwei356/taxonkit/taxonkit/cmd.getNodes({0xc0001bc420, 0x22}, 0x0)
/home/shenwei/go/src/github.com/shenwei356/taxonkit/taxonkit/cmd/util-basic-data.go:162 +0x1f3
github.com/shenwei356/taxonkit/taxonkit/cmd.loadData.func1()
/home/shenwei/go/src/github.com/shenwei356/taxonkit/taxonkit/cmd/util-basic-data.go:57 +0x134
created by github.com/shenwei356/taxonkit/taxonkit/cmd.loadData
/home/shenwei/go/src/github.com/shenwei356/taxonkit/taxonkit/cmd/util-basic-data.go:53 +0x18d
@shenwei356
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Thanks for reporting, but could you please provide more details? Like the command and input data.

I can't locate the bug with the current panic information. I guess the taxdump files you download or make are incomplete.

@weiguanyue
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weiguanyue commented Jun 8, 2023 via email

@shenwei356
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The error implies the nodes.dmp file is truncated/incomplete, which usually results from an erroneous or unfinished download.

It's recommended to re-download the taxdump file.
https://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz

@weiguanyue
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weiguanyue commented Jun 8, 2023 via email

@shenwei356
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Cheers! Please let me know, opening another issue, if you have any problems.

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@shenwei356 @weiguanyue