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Issues list

Extracting taxids for each desired taxonomic ranks into their own columns
#96 by charlesfoster was closed Apr 11, 2024
2
convert taxdump from IMG/VR metadata tutorial
#94 by fgvieira was closed Mar 20, 2024
2 tasks done
1
Missing ranks for GTDB genomes with duplicate names at different ranks
#92 by donovan-parks was closed Mar 6, 2024
8
some taxid that have taxonomy on ncbi but taxonkit not found or not complete
#90 by weiguanyue was closed Mar 5, 2024
1
Include LCA queries in output even when all taxids are skipped
#89 by standage was closed Dec 1, 2023
4 tasks done
3
Search equivalent names with name2taxid?
#87 by alvanuffelen was closed Mar 15, 2024
2 tasks done
2
ranks skipped in certain GTDB lineages
#85 by ggavelis was closed Aug 18, 2023
2
Filter duplicate taxIDs by order/class? new feature
#84 by philippbayer was closed Jul 28, 2023
2 tasks done
3
kraken2 report to mpa with counts
#83 by motroy was closed Jul 18, 2023
2
How to add the corresponding taxonomic level prefix based on the taxonomy name?
#82 by YeGuoZJU was closed Aug 18, 2023
6
An error occurs when running the latest version
#81 by weiguanyue was closed Jun 8, 2023
5
Possible issue with filter --save-predictable-norank and merged taxids bug
#80 by standage was closed Apr 12, 2023
4 tasks done
2
taxonkit reformat taxid 0 not found
#79 by Krasnopeev was closed Apr 10, 2023
2
taxid-changelog: support gzip-compressed dump files for saving space enhancement
#78 by shenwei356 was closed Apr 12, 2023
1
Placeholder for Clade rank (reformat)
#77 by poursalavati was closed Apr 13, 2023
4
"Error: Invalid taxonomic rank: realm" when making Diamond db of IMG/VR dataset
#76 by poursalavati was closed Apr 1, 2023
5
taxonkit lca gives error `[ERRO] bufio.Scanner: token too long' sometimes bug
#75 by taylorreiter was closed Apr 6, 2023
4 tasks done
4
Feature request: accession2taxid
#74 by stas-malavin was closed Mar 16, 2023
2
Feature request: report specific lineage ranks
#72 by soungalo was closed Apr 6, 2023
1
modification of the dmp files?
#71 by nick-youngblut was closed Dec 14, 2022
2
Error with makeblastdb using GTDB taxonkit create-taxdump taxid.map
#70 by BenjaminJPerry was closed Dec 29, 2022
4
Error rush: invalid option -- 'j'
#69 by Metag3nOmics was closed Dec 12, 2022
12
Error in list method bug bug?
#68 by Maryam-Haghani was closed Nov 27, 2022
10
Create-taxdump not generating subspecies tutorial
#67 by Lucas-Maciel was closed Dec 29, 2022
4
panic: runtime error: index out of range [4] with length 4 bug?
#66 by Summer0lhl was closed Apr 13, 2023
1
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