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Issues list

MMseqs easy-search for profiles only produces one hit per domain in profile database?
#862 by Andy-B-123 was closed Jul 8, 2024
2
Unexpected Sequence Identity Values for Redundant Sequences
#861 by FelixMQuintana was closed Jul 8, 2024
2
How to create an expanded alignment database?
#857 by zdk123 was closed Jul 8, 2024
2
taxonomy output with queryID
#855 by ckeuschn was closed Jun 26, 2024
2
easy-taxonomy for contigs
#851 by TimothyStephens was closed Jun 30, 2024
6
result2msa input has wrong type (Generic)
#850 by seang123 was closed Jun 21, 2024
4
results2profile taking a very very long time
#848 by dthorburn was closed May 28, 2024
6
fix typos hindering expandable profile db to be merged properly
#840 by endixk was merged May 2, 2024 Loading…
Can mmseqs easy-search ouput all query-target pairs?
#839 by Zuttergutao was closed May 3, 2024
2
Prefilter (second round) dies during taxonomic classification with UniRef90 DB
#838 by sean-workman was closed May 4, 2024
6
mmseqs as a replacement for cd-hit-est
#836 by hjruscheweyh was closed May 7, 2024
2
recover longest orf after fragment elimination
#832 by LunaJang was merged May 21, 2024 Loading…
.
#825 by Jeongyeonkim23 was closed Mar 17, 2024
Taxonomy info for PDB
#821 by ahof1704 was closed Mar 14, 2024
14
URL to the PDB database seems to be inactive
#820 by ahof1704 was closed Mar 19, 2024
1
Fix fasta filename in easy-cluster & easy-linclust usage
#812 by nathanweeks was merged Feb 1, 2024 Loading…
1
Q closed
#810 by art-egorov was closed Jan 30, 2024
mmseqs easy-search taking much longer than expected
#805 by pipparichter was closed Feb 4, 2024
4
Easy-cluster createdb message "Cannot extract identifier from entry"
#804 by wichne was closed Jan 23, 2024
2
solve #615 issue qframe and tframe don't work
#803 by ChunShow was merged May 21, 2024 Loading…
mmseqs search is producing multiple output files
#802 by pipparichter was closed Jan 18, 2024
4
Too many arguments when creating database
#798 by pipparichter was closed Jan 13, 2024
3
Clustering substrings
#794 by AlessioMilanese was closed Feb 21, 2024
2
[Question] Can easy-taxonomy be used for assembly-level taxonomic assignments instead of contig-level?
#790 by jolespin was closed Dec 19, 2023
2
mmseqs taxonomy ends with multiple files without contig names
#786 by samche42 was closed Dec 4, 2023
2
ProTip! Updated in the last three days: updated:>2024-07-07.