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@sourmash-bio

sourmash, for large-scale biological sequence search!

Quickly search, compare, and analyze genomic and metagenomic data sets.

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  1. sourmash sourmash Public

    Quickly search, compare, and analyze genomic and metagenomic data sets.

    Python 446 78

  2. branchwater branchwater Public

    Searching large collections of sequencing data with genome-scale queries

    HTML 6 2

  3. wort wort Public

    A database for signatures of public genomic sources

    Python 17 2

  4. sourmash_plugin_branchwater sourmash_plugin_branchwater Public

    fast, multithreaded sourmash operations: search, compare, and gather.

    Python 13 2

  5. database-examples database-examples Public

    Example workflows and useful scripts for building your own sourmash databases

    Python 2

  6. sourmash-mixers sourmash-mixers Public

    A meta-package to install a number of sourmash plugins!

    4

Repositories

Showing 10 of 33 repositories
  • sourmash_plugin_branchwater Public

    fast, multithreaded sourmash operations: search, compare, and gather.

    sourmash-bio/sourmash_plugin_branchwater’s past year of commit activity
    Python 13 AGPL-3.0 2 69 12 Updated Jul 3, 2024
  • database-releases Public

    Build infrastructure for official sourmash database releases

    sourmash-bio/database-releases’s past year of commit activity
    Python 1 BSD-3-Clause 1 1 3 Updated Jul 2, 2024
  • sourmash Public

    Quickly search, compare, and analyze genomic and metagenomic data sets.

    sourmash-bio/sourmash’s past year of commit activity
    Python 446 78 646 (4 issues need help) 56 Updated Jul 1, 2024
  • sourmash_plugin_directsketch Public
    sourmash-bio/sourmash_plugin_directsketch’s past year of commit activity
    Python 1 BSD-3-Clause 1 10 2 Updated Jul 1, 2024
  • 2024-benchmark-gather Public

    Benchmarking code for various gather implementations

    sourmash-bio/2024-benchmark-gather’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 30, 2024
  • wort Public

    A database for signatures of public genomic sources

    sourmash-bio/wort’s past year of commit activity
    Python 17 2 22 4 Updated Jun 26, 2024
  • sourmash_plugin_betterplot Public

    Improved plotting/viz and cluster examination for sourmash

    sourmash-bio/sourmash_plugin_betterplot’s past year of commit activity
    Python 0 BSD-3-Clause 0 17 0 Updated Jun 18, 2024
  • sourmash_utils Public

    Python utilities for sourmash plugins and scripts

    sourmash-bio/sourmash_utils’s past year of commit activity
    Python 0 0 2 1 Updated Jun 18, 2024
  • sourmash_plugin_template Public template

    template for building sourmash plugins

    sourmash-bio/sourmash_plugin_template’s past year of commit activity
    Python 2 BSD-3-Clause 0 1 0 Updated May 18, 2024
  • sourmash.bio Public
    sourmash-bio/sourmash.bio’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Apr 27, 2024
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