updated to patlas 1.6.0 release

tiagofilipe12 · Sep 25, 2018 · 0638d8a · 0638d8a
1 parent f3e9f2f
commit 0638d8a
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Showing 3 changed files with 10 additions and 10 deletions.
diff --git a/docker-images/mapping/Dockerfile b/docker-images/mapping/Dockerfile
@@ -40,10 +40,10 @@ ENV PATH="/ngstools/bin/samtools-1.7:$PATH"
 
 WORKDIR /ngstools/data/
 
-RUN wget https://github.com/tiagofilipe12/pATLASflow/releases/download/1.5.2/indexes.tar.gz
+RUN wget https://github.com/tiagofilipe12/pATLASflow/releases/download/1.6.0/indexes.tar.gz
 
 RUN tar xvzf indexes.tar.gz
 
 # Fetches json with lenghts used to generate -k parameter for bowtie as well as
 # plasmid lenghts
-RUN wget https://github.com/tiagofilipe12/pATLASflow/releases/download/1.5.2/length_plasmid_db.json
+RUN wget https://github.com/tiagofilipe12/pATLASflow/releases/download/1.6.0/length_plasmid_db.json
diff --git a/docker-images/mash_screen/Dockerfile b/docker-images/mash_screen/Dockerfile
@@ -20,4 +20,4 @@ WORKDIR /ngstools/data/
 
 # download index file generated by mash_wrapper.py and distributed with
 # its release
-RUN wget https://github.com/tiagofilipe12/pATLASflow/releases/download/1.5.2/plasmid_db_reference.msh
+RUN wget https://github.com/tiagofilipe12/pATLASflow/releases/download/1.6.0/plasmid_db_reference.msh
diff --git a/nextflow.config b/nextflow.config
@@ -37,15 +37,15 @@ params {
 }
 
 process {
-    $mashScreen.container = 'tiagofilipe12/patlasflow_mash_screen:1.5.2'
-    $mashOutputJson.container = 'tiagofilipe12/patlasflow_mash_screen:1.5.2'
-    $runMashDist.container = 'tiagofilipe12/patlasflow_mash_screen:1.5.2'
-    $mashDistOutputJson.container = 'tiagofilipe12/patlasflow_mash_screen:1.5.2'
-    $mappingBowtie.container = 'tiagofilipe12/patlasflow_mapping:1.5.2'
+    $mashScreen.container = 'tiagofilipe12/patlasflow_mash_screen:1.6.0'
+    $mashOutputJson.container = 'tiagofilipe12/patlasflow_mash_screen:1.6.0'
+    $runMashDist.container = 'tiagofilipe12/patlasflow_mash_screen:1.6.0'
+    $mashDistOutputJson.container = 'tiagofilipe12/patlasflow_mash_screen:1.6.0'
+    $mappingBowtie.container = 'tiagofilipe12/patlasflow_mapping:1.6.0'
     $mappingBowtie.scratch = true
-    $samtoolsView.container = 'tiagofilipe12/patlasflow_mapping:1.5.2'
+    $samtoolsView.container = 'tiagofilipe12/patlasflow_mapping:1.6.0'
     $samtoolsView.scratch = true
-    $jsonDumpingMapping.container = 'tiagofilipe12/patlasflow_mapping:1.5.2'
+    $jsonDumpingMapping.container = 'tiagofilipe12/patlasflow_mapping:1.6.0'
 }
 
 // this should be passed with the -profile mash_screen