Annotated data.
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Updated
Jul 1, 2024 - Python
Annotated data.
Single-cell analysis in Python. Scales to >1M cells.
Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
Multimodal Data (.h5mu) implementation for Python
anndata with trees
muon is a multimodal omics Python framework
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
Bring your single-cell data to life
Muon for Julia
Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData
Neighbor graphs for single-cell data (AnnData)
Cell approximate nearest neighbors (ANN)
AnnData-compatible wrapper of Spotify's annoy library.
Create PyTorch Datasets from AnnData
Plotting assistant and resources
Awesome GRN enhanced AnnData toolkit
.h5mu files interface for Seurat
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