DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
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Updated
Mar 19, 2024 - Python
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
🦄 An Artificial Inteligence to teach Google's Dinosaur to jump cactus
Official code repository for GATK versions 4 and up
Using artificial intelligence and genetic algorithms to automatically write programs. Tutorial: http://www.primaryobjects.com/cms/article149
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
🔬 Assemble large genomes using short reads
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
GenomeTools genome analysis system.
Genome annotation with AUGUSTUS
A genome browser that shows long reads and complex variants better
Whole Genome Sequencing analysis, WGS analysis
Nanopore sequence read simulator
Next generation sequencing reads de novo assembler.
Genomic Data Retrieval with R
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
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