Java command line tool for fetching, parsing and displaying in a Jmol window all interactions zones between proteins or molecular complexes
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Updated
Nov 13, 2020 - Java
Java command line tool for fetching, parsing and displaying in a Jmol window all interactions zones between proteins or molecular complexes
A Java program that checks RNA similarity between strings.
CrossLinX is the acronym of protein CrossLINks eXplorer.
Software for visualizing and exporting proteins as a graph model in various formats. There are additional features for graph-based homology modelling
Topology of Oriented Protein Structures
Search protein structural motifs in the PDB.
βοΈ Macromolecular Miner - A framework for template-free detection of substructure conservation in biological structure data.
π SiNGA (Simulation of Natural Systems using Graph Automata) is an open-source library containing tools especially for structural bioinformatics and systems biology.
RUPEE: A fast and accurate purely geometric protein structure search
π Fit3D - An application for template-based detection of small structural motifs in protein structures and macromolecular structure data.
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
ππ¬β BioJava is an open-source project dedicated to providing a Java library for processing biological data.
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