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Issues list

inadvertent Python 3.6 dependency?
#63 by samcmill was closed Jan 7, 2020 updated Jan 7, 2020
13
Investigate stream and captured output
#59 by dkp was closed Oct 14, 2019 updated Oct 15, 2019
8
circleci should release latest and tagged version
#56 by vsoch was closed Apr 3, 2019 updated Apr 3, 2019
scif run myapp -h triggers the scif help
#53 by bilke was closed Mar 28, 2019 updated Mar 28, 2019
6
runscript shouldn't be written if no apprun section bug
#54 by vsoch was closed Mar 28, 2019 updated Mar 28, 2019
1
singularity run --app support?
#51 by bilke was closed Nov 7, 2018 updated Nov 7, 2018
6
scif run working directory
#50 by bilke was closed Oct 27, 2018 updated Oct 27, 2018
2
Weird behavior in Singularity recipe
#48 by saramonzon was closed Aug 23, 2018 updated Aug 23, 2018
7
Nextflow-SCIF example : Possible solution
#47 by saramonzon was closed Aug 3, 2018 updated Aug 3, 2018
7
$SCIF_* environment variables not available in %appinstall
#40 by bilke was closed Feb 22, 2018 updated Feb 22, 2018
1
6
Add better background / introduction page
#7 by vsoch was closed Feb 9, 2018 updated Feb 9, 2018
3
Add other integration examples help wanted
#9 by vsoch was closed Feb 1, 2018 updated Feb 1, 2018
8
references to existing literature needed?
#13 by ps-account was closed Jan 31, 2018 updated Jan 31, 2018
2
remove (now old) docs from here
#38 by vsoch was closed Jan 29, 2018 updated Jan 29, 2018
1
Support app names containing period (".")
#35 by Saford91 was closed Jan 26, 2018 updated Jan 26, 2018
5
update dates in licenses
#36 by vsoch was closed Jan 26, 2018 updated Jan 26, 2018
introduced bug when installing files
#33 by vsoch was closed Jan 26, 2018 updated Jan 26, 2018
1
test echo of variable to $SCIF_APPENV during install
#31 by vsoch was closed Jan 25, 2018 updated Jan 25, 2018
@vsoch
1
scif exec parameter parsing fails?
#29 by fbartusch was closed Jan 23, 2018 updated Jan 23, 2018
1
18
print of help needs to honor spacing
#28 by vsoch was closed Jan 22, 2018 updated Jan 22, 2018
1
run needs to parse / pass on additional arguments
#24 by vsoch was closed Jan 22, 2018 updated Jan 22, 2018
python2 exec invalid name
#27 by vsoch was closed Jan 22, 2018 updated Jan 22, 2018
Create entrypoint to activate environment
#25 by vsoch was closed Jan 20, 2018 updated Jan 20, 2018
1
--quiet should be honored for run
#23 by vsoch was closed Jan 20, 2018 updated Jan 20, 2018
appinstall needs to happen at SCIF_approot
#22 by vsoch was closed Jan 20, 2018 updated Jan 20, 2018
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