EpiExtract4GARD

This repository was a second back-up of my creation: EpiExtract4GARD for the National Center for Advancing Translational Sciences (NCATS) at the National Institutes of Health (NIH). This also serves as a placeholder repository so you can see the updated version of my work there.

Name		Name	Last commit message	Last commit date
Latest commit History 12 Commits
WZK_Work		WZK_Work
biobert-pytorch		biobert-pytorch
saved_model/my_model_orphanet_final		saved_model/my_model_orphanet_final
All_Disease20_Less5_Hist.png		All_Disease20_Less5_Hist.png
All_Disease_Hist.png		All_Disease_Hist.png
All_Disease_Hist20.png		All_Disease_Hist20.png
All_Disease_Hist20original.png		All_Disease_Hist20original.png
CoNLL transformers training.ipynb		CoNLL transformers training.ipynb
GARD.csv		GARD.csv
LICENSE		LICENSE
README.md		README.md
Testing EpiExtract4GARD locally.ipynb		Testing EpiExtract4GARD locally.ipynb
all_dz_abstract_EpiClassification.ipynb		all_dz_abstract_EpiClassification.ipynb
classify_abs.py		classify_abs.py
crfpp-0.58.tar.gz		crfpp-0.58.tar.gz
extract_abs.py		extract_abs.py
gard-id-name-synonyms.json		gard-id-name-synonyms.json
gather_all_pubs.ipynb		gather_all_pubs.ipynb
tokenizer.pickle		tokenizer.pickle
transformers.ipynb		transformers.ipynb

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