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Repository files navigation

List of solved problems

[.]	ID		Title
[x]	DNA		Counting DNA Nucleotides
[x]	RNA		Transcribing DNA into RNA
[x]	REVC	Complementing a Strand of DNA
[x]	GC		Computing GC Content
[x]	HAMM	Counting Point Mutations
[x]	SUBS	Finding a Motif in DNA
[x]	CONS	Consensus and Profile
[x]	GRPH	Overlap Graphs
[x]	IPRB	Mendel's First Law
[x]	LCS		Finding a Shared Motif
[x]	PERM	Enumerating Gene Orders
[ ]	PROT	Protein Translation
[ ]	REVP	Locating Restriction Sites
[ ]	IEV		Calculating Expected Offspring
[ ]	LEXF	Enumerating k-mers Lexicographically
[ ]	LIA		Independent Alleles
[ ]	LONG	Genome Assembly as Shortest Superstring
[ ]	MPRT	Finding a Protein Motif
[ ]	MRNA	Inferring mRNA from Protein
[ ]	ORF		Open Reading Frames
[ ]	PROB	Introduction to Random Strings
[ ]	PRTM	Calculating Protein Mass
[ ]	REAR	Reversal Distance
[ ]	SIGN	Enumerating Oriented Gene Orderings
[ ]	SPLC	RNA Splicing
[ ]	TREE	Completing a Tree
[ ]	CORR	Error Correction in Reads
[ ]	INOD	Counting Phylogenetic Ancestors
[ ]	KMER	k-Mer Composition
[ ]	KMP		Speeding Up Motif Finding
[ ]	LEXV	Ordering Strings of Varying Length Lexicographically
[ ]	PDST	Creating a Distance Matrix
[ ]	PPER	Partial Permutations
[ ]	RSTR	Matching Random Motifs
[ ]	SORT	Sorting by Reversals
[ ]	SSEQ	Finding a Spliced Motif
[ ]	SSET	Counting Subsets
[ ]	TRAN	Transitions and Transversions
[ ]	ASPC	Introduction to Alternative Splicing
[ ]	EVAL	Expected Number of Restriction Sites
[ ]	LCSQ	Finding a Shared Spliced Motif
[ ]	LREP	Finding the Longest Multiple Repeat
[ ]	NWCK	Distances in Trees
[ ]	SETO	Introduction to Set Operations
[ ]	SPEC	Inferring Protein from Spectrum
[ ]	CONV	Comparing Spectra with the Spectral Convolution
[ ]	CTBL	Creating a Character Table
[ ]	DBRU	Constructing a De Bruijn Graph
[ ]	EDIT	Edit Distance
[ ]	FULL	Inferring Peptide from Full Spectrum
[ ]	INDC	Independent Segregation of Chromosomes
[ ]	NKEW	Newick Format with Edge Weights
[ ]	RNAS	Counting RNA Secondary Structures
[ ]	SUFF	Encoding Suffix Trees
[ ]	AFRQ	Counting Disease Carriers
[ ]	CSTR	Creating a Character Table from Genetic Strings
[ ]	CUNR	Counting Unrooted Binary Trees
[ ]	EDTA	Edit Distance Alignment
[ ]	LING	Linguistic Complexity of a Genome
[ ]	MREP	Identifying Maximal Repeats
[ ]	PCOV	Genome Assembly with Perfect Coverage
[ ]	PRSM	Matching a Spectrum to a Protein
[ ]	QRT		Quartets
[ ]	SGRA	Using the Spectrum Graph to Infer Peptides
[ ]	CHBP	Character-Based Phylogeny
[ ]	CNTQ	Counting Quartets
[ ]	GASM	Genome Assembly Using Reads
[ ]	GLOB	Global Alignment with Scoring Matrix
[ ]	MEND	Inferring Genotype from a Pedigree
[ ]	ROOT	Counting Rooted Binary Trees
[ ]	SEXL	Sex-Linked Inheritance
[ ]	SPTD	Phylogeny Comparison with Split Distance
[ ]	WFMD	The Wright-Fisher Model of Genetic Drift
[ ]	ASMQ	Assessing Assembly Quality with N50 and N75
[ ]	CSET	Fixing an Inconsistent Character Set
[ ]	FOUN	The Founder Effect and Genetic Drift
[ ]	GCON	Global Alignment with Constant Gap Penalty
[ ]	GREP	Genome Assembly with Perfect Coverage and Repeats
[ ]	LOCA	Local Alignment with Scoring Matrix
[ ]	MGAP	Maximizing the Gap Symbols of an Optimal Alignment
[ ]	MULT	Multiple Alignment
[ ]	QRTD	Quartet Distance
[ ]	ALPH	Alignment-Based Phylogeny
[ ]	GAFF	Global Alignment with Scoring Matrix and Affine Gap Penalty
[ ]	LAFF	Local Alignment with Affine Gap Penalty
[ ]	RSUB	Identifying Reversing Substitutions

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