Cherry pick PR #3359: Remove starboard/common/* above Starboard. #3656
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Refer to the original PR: #3359
Remove starboard/common/file, starboard/common/mutex, starboard/common/log, starboard/common/atomic above Starboard.
Additional code clean up.
b/322248408
Change-Id: I06f67d544f4cd6618338b87585d5099c519f43a8