Discussions

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  ChainUsage plot is empty while I see alignment

  misrak asked Jun 6, 2024 in Q&A · Closed · Answered

  

  

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  Feature for allele search doesn't intersect JGene error when running findAlleles

  michael-ford asked Jun 27, 2024 in Q&A · Answered

  

  

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  Generating all all_contig_annotations.json to run enclone after MiXCR

  JackYGhannam started Jun 24, 2024 in General

  

  

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  Preset for long-read RNAseq with cell barcode

  Euchiz asked May 31, 2024 in Q&A · Answered

  

  

  

  

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  Error in mixcr buildLibrary process

  yuyuleung asked Jun 26, 2024 in Q&A · Closed · Answered

  

  

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  PacBio with 10X barcodes, and partial alignments within it (ideally aiming for all_contig.fasta-like output)

  ktpolanski asked Jun 14, 2024 in Q&A · Unanswered

  

  

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  Rhapsody BCR+TCR full length data input

  albertop210 started Jun 18, 2024 in General

  

  

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  Help with TCR-seq alignment rate

  seoyeonoh12 started Jun 17, 2024 in General

  

  

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  Help with clonotype analysis of BCR cDNA library

  liyunjian asked May 27, 2024 in Q&A · Answered

  

  

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  allVHitsWithScore allDHitsWithScore allJHitsWithScore allCHitsWithScore

  2061574124 asked Jun 11, 2024 in Q&A · Answered

  

  

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  How to perform MiXCR on my spatial TCR data

  yuyuleung asked Jun 5, 2024 in Q&A · Answered

  

  

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  The majority of results in 'clones_TR[A|B].tsv' are "region_not_covered"

  ChoiJi-Hye asked Jun 10, 2024 in Q&A · Answered

  

  

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  What's the parameter of UMI-guided assembly

  Angieiscute asked May 31, 2024 in Q&A · Answered

  

  

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  Somatic hypermutation analysis

  pbpayal asked May 13, 2024 in Q&A · Closed · Answered

  

  

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  For detection of somatic hypermutation (SHM) ?

  xmy1990 asked May 8, 2024 in Q&A · Answered

  

  

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  Somatic Hypermutation Status of IGHV status

  xmy1990 asked May 27, 2024 in Q&A · Answered

  

  

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  Mixcr to VDJtools

  pbpayal asked Apr 16, 2024 in Q&A · Closed · Answered

  

  

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  Question about filtering reads prior to Mixcr

  SirKuikka asked May 28, 2024 in Q&A · Answered

  

  

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  Analysis of single chain Fragment variable (scFv)

  d-jch started May 14, 2024 in General

  

  

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  Alignment and germline gene inference on pre-processed data

  giulioisac asked May 23, 2024 in Q&A · Answered

  

  

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  transitioning from postanalysis to exportPlots

  Januaryyiyue started May 22, 2024 in General

  

  

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  Mapping TCR info to individual cells (scRNA-seq dataset)

  malonzm1 asked Sep 1, 2023 in Q&A · Answered

  

  

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  How many cloneid has one cell?

  yueli8 asked May 8, 2024 in Q&A · Answered

  

  

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  Docker Image with IMGT library

  val-axthelm asked May 8, 2024 in Q&A · Answered

  

  

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  UMI-based error correction

  bshim181 asked Apr 29, 2024 in Q&A · Answered

  

  

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