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Unavailable and no longer maintaining any of these projects
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Unavailable and no longer maintaining any of these projects
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Achievement: QuickdrawAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

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Achievement: QuickdrawAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2
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  • py_fasta_validator Public

    Forked from linsalrob/py_fasta_validator

    A Python extension of the fasta validator

    Python MIT License Updated Feb 5, 2023

  • mask_plasmid Public archive

    Generate a quick BED file of a Genbank file to feed into Snippy4 --mask

    Python GNU General Public License v3.0 Updated Dec 8, 2022

  • modules Public archive

    Forked from nf-core/modules

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    Nextflow 1 MIT License Updated Oct 5, 2022

  • flylips Public

    A tool to fit ellipses to Drosophila wings

    Python Updated Sep 21, 2022

  • slim-containers Public archive

    Slimmer container for bioinformatics using conda

    docker bioinformatics container
    Dockerfile Updated Jun 28, 2022

  • mycv Public archive

    My CV

    TeX Updated Oct 1, 2021

  • transtreesampler Public

    Sample transmission trees using Outbreaker2

    R 1 1 Updated Apr 9, 2021

  • kraken-trawl Public archive

    A tool to help create custom `kraken` databases

    Python 9 3 GNU General Public License v3.0 Updated Aug 3, 2020

  • LisSero Public archive

    Forked from MDU-PHL/LisSero

    In silico serotype prediction for Listeria monocytogenes

    Python GNU General Public License v2.0 Updated Apr 26, 2020

  • beast2_constsites Public archive

    Update your BEAST2 XML to account for constant sites

    bioinformatics python3 beast2
    Python 6 1 GNU General Public License v3.0 Updated Oct 29, 2019

  • thedaggiebinfie Public

    My website

    HTML Updated Oct 9, 2019

  • db-check Public

    Sanity check your FASTA DB

    Python 3 Updated Dec 13, 2018

  • beastify Public

    Partition your alignment into distinct codon positions and non-coding positions

    Python Updated Nov 20, 2018

  • meningotype Public archive

    Forked from MDU-PHL/meningotype

    In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis

    Python 1 GNU General Public License v3.0 Updated Aug 7, 2018

  • bsibayes Public

    An R package for Bayesian analysis of messy epidemiological data

    HTML Updated Jul 27, 2018

  • mig-converter Public

    Convert Migrate-N output from M to Nm

    GNU General Public License v3.0 Updated Apr 20, 2018

  • harrietr Public archive

    An `R` package for various phylogenetic and evolutionary biology data manipulations

    bioinformatics r evolution phylogenetics
    R 12 3 GNU General Public License v3.0 Updated Mar 5, 2018

  • migverify Public

    Check your sequence Migrate-N infiles for monomorphic loci and too many missing data

    Python GNU General Public License v3.0 Updated Oct 2, 2017

  • andersgs.github.io Public

    My page with blogdown

    HTML 1 Updated Jul 7, 2017

  • workflows Public

    Forked from common-workflow-library/legacy

    Community maintained workflows & tools (with examples)

    Python Apache License 2.0 Updated May 12, 2017

  • irelr Public

    An R package that implements the functionality of iRel

    R 1 Updated Jan 29, 2017

  • vs-locus Public

    A tool to mine vsearch cluster results for haplotypes

    Python GNU General Public License v3.0 Updated Nov 14, 2016

  • nullarbor_translate Public

    Translate the Nullarbor output into any format using Jinja2 templates

    HTML GNU General Public License v3.0 Updated Oct 17, 2016

  • microsimr Public archive

    microsimr

    R 1 1 Updated Jul 8, 2016

  • canberra_workshop_day2 Public

    R 1 MIT License Updated Apr 2, 2016

  • pop_gen_scripts Public

    A repo for some of my collection of population genetic scripts

    R Updated Sep 25, 2015

  • measuringNaturalSelection Public

    Code used in the chapter Measuring Natural Selection

    1 MIT License Updated Oct 11, 2014

  • DNABarcodes Public

    Automated DNA barcode assembly, quality control, and annotation

    Python GNU General Public License v3.0 Updated May 12, 2014

  • dnabarcodereader Public

    Automate DNA barcode assembly, quality control, and query

    1 GNU General Public License v2.0 Updated Nov 29, 2013