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NeuSomatic release 0.2.1

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@msahraeian msahraeian released this 11 Jul 07:35
· 5 commits to master since this release
v0.2.1
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Learn about vigilant mode.

This release contains the following changes:

  • Significant (2-3x) speed improvement for scanning alignment files.
  • Lifted the MD tag requirement for input bam files.
  • More program options added for scan_alignment (e.g. filter duplicate reads,...)
  • An option is added for normalizing MQ, BQ, and other alignment channels for input candidate matrices
  • New pre-trained models based on SEQC-II dataset are provided
  • Update to Pytorch 1.1.0, torchvision 0.3.0, and cudatoolkit 9.0
  • GPU training speed improvement by 25%.
  • Minor fixes
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