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Issues list

Return bytes or unicode from Bio.SeqIO index get_raw
#713 by tiagoantao was closed Dec 22, 2015
1
8
SearchIO: Error if blast text contains long bitscores
#500 by hcraT was closed Jul 8, 2015
1
5
Entrez doesn't yet support ECitMatch
#517 by hexylena was closed May 6, 2015
1
15
Enforce basic PEP8 style with a pre-commit git hook
#493 by peterjc was closed May 24, 2019
1
10
SffIO.py incorrectly parses gzip file stream
#440 by necrolyte2 was closed Dec 11, 2014
1
3
Define Bio.KEGG.Enzyme.read(...) function
#593 by peterjc was closed Oct 30, 2015
1
1
install fails on OSX with XCode 5.1
#324 by bassdread was closed May 26, 2014
1
2
Some of the Bio.Phylo tutorials do not work with Python3 Documentation good first issue This should be an easy fix, suitable for beginners
#334 by tiagoantao was closed Oct 7, 2022
1
18
ExPASy.sprot_search_ful and ExPASy.sprot_search_de do not work Bug help wanted
#253 by miniocz was closed Oct 19, 2018
1
7
Genbank LOCUS "circular" topology and molecule type ignored From Redmine
#363 by pgfoster was closed Nov 24, 2016
1
12
Regexp for matching trees in PAML (codeml) output
#453 by jergosh was closed Jan 9, 2015
1
3
PDB Entity.copy() mangles disordered atoms.
#455 by macraild was closed Aug 17, 2020
1
@JoaoRodrigues
14
Per-column annotations for multiple-sequence alignments From Redmine
#516 by peterjc was closed Aug 4, 2017
1
2
Bio.motifs broken on C Python without NumPy
#851 by peterjc was closed Dec 12, 2016
1
3
Enforce basic PEP8 style with TravisCI
#840 by peterjc was closed Jul 22, 2016
1
7
test_NCBIXML.py UnicodeDecodeError: 'ascii' codec can't decode byte 0xc3
#855 by sagitter was closed Jul 15, 2017
1
17
Entrez Tutorial, "journals", is no longer in Entrez databases.
#735 by vincentdavis was closed Apr 6, 2016
1
6
New BioSQL test_taxon_left_right_values test requires internet
#819 by peterjc was closed Jun 9, 2016
1
4
Friendlier traceback for SeqIO.index when dealing with non-BGZIP compressed file Enhancement help wanted
#1666 by brainstorm was closed Sep 4, 2018
1
3
DSSP support for mmCIF, perhaps not completely resolved?
#1581 by bwllc was closed Dec 31, 2020
1
@JoaoRodrigues
6
Alphabet error "alignment should be a *PROTEIN* alignment" with MultipleSeqAlignment of Proteins
#1151 by universvm was closed Apr 14, 2017
1
10
Allow modifications of sequence in SFF objects
#880 by twrightsman was closed Jul 22, 2016
1
7
genbank dbsource record not exported with SeqIO.write Enhancement
#920 by amvdsloot was closed Dec 4, 2020
1
2
SeqIO.index fails on empty ACCESSION lines in GenBank
#1344 by kblin was closed Aug 1, 2017
1
15
Use self.assertIn in our unit tests good first issue This should be an easy fix, suitable for beginners Testing
#1006 by peterjc was closed Dec 9, 2016
1
2
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