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audit pre-2021-04-27 contributors to check for relicensing #16708

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716b165
DO NOT MERGE: skip CI
mr-c Sep 18, 2023
47bcf0d
start auditing contributors to check for relicensing
mr-c Sep 18, 2023
d7468e1
Corrections and additions to mailmap
nsoranzo Sep 22, 2023
72bb654
Corrections and finished adding Y addresses to mailmap
nsoranzo Sep 25, 2023
e1d72b7
Add X addresses to mailmap
nsoranzo Sep 25, 2023
02082f9
Add W addresses to mailmap
nsoranzo Sep 25, 2023
4388ed9
finish the "A"s.
mr-c Sep 26, 2023
ae16ca8
One correction and add V addresses to mailmap
nsoranzo Sep 26, 2023
929b82c
finish "B"s; add newline between letter sections
mr-c Sep 28, 2023
95bf8bf
Corrections
nsoranzo Sep 28, 2023
0effa33
Add U addresses to mailmap
nsoranzo Oct 4, 2023
ee467ba
Simon Gladman's heirs have approved the relicensing
mr-c Oct 13, 2023
bd79838
document "C"s
mr-c Oct 16, 2023
45fd134
Add T addresses to mailmap
nsoranzo Oct 9, 2023
6d1340c
document "D"s
mr-c Nov 2, 2023
35ae44c
"E"s
mr-c Nov 2, 2023
7cf6a95
"F"s
mr-c Nov 3, 2023
0b81356
"G"s
mr-c Nov 3, 2023
fa5e196
"H"s
mr-c Nov 3, 2023
c80f641
"I"s
mr-c Nov 3, 2023
3e9fa8d
"J"s
mr-c Nov 3, 2023
46f283f
Add some "S" addresses to mailmap. Corrections
nsoranzo Oct 18, 2023
a2484b9
more acks
mr-c Nov 3, 2023
a817864
"K"s
mr-c Nov 4, 2023
d9a8331
more acks
mr-c Nov 5, 2023
33b9efc
"L"s
mr-c Dec 7, 2023
2e27022
"M"s
mr-c Jun 27, 2024
906245e
11 authors relicensing
mr-c Jun 27, 2024
d08734e
list of missing contributors
mr-c Jun 27, 2024
e757f04
13 more relicensed
mr-c Jun 27, 2024
833ff2f
normalize table (GH username, primary email, evidence)
mr-c Jun 28, 2024
aa701e4
"N"s
mr-c Jun 28, 2024
39146cc
"O"s
mr-c Jun 28, 2024
442e4f3
5 more relicensing + 3 more missing
mr-c Jun 28, 2024
b171cc5
"P"s
mr-c Jun 28, 2024
e6c9d44
"Q"s
mr-c Jun 28, 2024
d1ea18a
"R"s
mr-c Jun 28, 2024
a821414
"S"s
mr-c Jun 28, 2024
988526e
Audit of the "T"s
mr-c Jun 28, 2024
3202302
Add a bit of missing user detail
natefoo Jun 28, 2024
1513d41
another relicenser
mr-c Jun 28, 2024
10ee598
Audit of "U"s-"Z"
mr-c Jun 28, 2024
2c0f5b2
notifications have been sent
mr-c Jun 28, 2024
4941a59
9 relicensors
mr-c Jun 28, 2024
d898e08
Add a few more missing github usernames
natefoo Jun 28, 2024
47b4489
8 more relicensors
mr-c Jun 28, 2024
e0b1a34
refresh
mr-c Jun 28, 2024
ee81473
11 more relicensing
mr-c Jun 28, 2024
e91187a
7 more!
mr-c Jun 29, 2024
2b052cd
reformat missing table for better screenshots
mr-c Jun 29, 2024
425b0ec
missed one
mr-c Jun 29, 2024
592a708
missing list: add hyperlink to their GitHub profile
mr-c Jun 29, 2024
46498f9
missing list: better explanation
mr-c Jun 29, 2024
9c74474
rewrite list of missing contributors in a more machine processable way
mr-c Jun 29, 2024
4bc52c0
thank you jgoecks
mr-c Jun 29, 2024
79a60f6
4 more
mr-c Jun 30, 2024
70ae0bb
BradHolmes contributions are public domain, the joint work is allowed…
mr-c Jun 30, 2024
400928a
5 more!
mr-c Jul 1, 2024
b0d00bb
another relicensing with added GitHub username for Frederik Delaere
mr-c Jul 1, 2024
4934fb9
4 more!
mr-c Jul 3, 2024
82966ba
better organize the list
mr-c Jul 3, 2024
5a7e6af
1 more
mr-c Jul 3, 2024
45b877a
from Nicola, thanks!
mr-c Jul 3, 2024
590fe19
More trevor to agreed
nsoranzo Jul 3, 2024
e3175f0
+1, add 2 to the MISSING list
mr-c Jul 3, 2024
a8aa957
Rory & Norbert
mr-c Jul 3, 2024
465a00a
remove dup, add addy for Jerome R
mr-c Jul 3, 2024
6ba5b47
another relicenser; removed a dup entry; added better email addresses…
mr-c Jul 4, 2024
0c0067f
one more
mr-c Jul 8, 2024
2934ffa
+1
mr-c Jul 8, 2024
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"K"s
  • Loading branch information
mr-c committed Nov 4, 2023
commit a8178641c9a4d03a82e210fe46d1cfa3404e3148
20 changes: 20 additions & 0 deletions .mailmap
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,7 @@
# git log --pretty="%aN <%aE>" | sort -u | less
# 631 as of 2023-09-18
# 498 as of 2023-11-02
# 428 as of 2023-11-04
Ahmed Hamid Awan <aawan@mindgrub.com> # GH user: ahmedhamidawan
Ahmed Hamid Awan <aawan@mindgrub.com> Ahmed Awan <newadmin@galaxyc.local>
Ahmed Hamid Awan <aawan@mindgrub.com> Ahmed Awan <newadmin@galaxyc.win.ad.jhu.edu>
Expand Down Expand Up @@ -258,10 +259,29 @@ Julien Van Braekel <juvanbraekel@bioit-galaxy-test.sciensano.be> <29703119+jvanb
Junzhou Wang <junzhouwang@gmail.com> # GH user: junzwang
Jeremy Volkening <jdv@base2bio.com> # GH user: jvolkening

Kai Kruse <krusekai@gmail.com> # GH user: kaukrise
Kaivan Kamali <kxk302@psu.edu> # GH user: kxk302
Kaivan Kamali <kxk302@psu.edu> <kxk302@gmail.com>
kaktus42 <vowinkel.alexander@gmail.com> # GH user: kaktus42
Kanwei Li <kanwei@gmail.com> # GH user: kanwei
Katarzyna Kamieniecka <k.murat1@bradford.ac.uk> # GH user: kpbioteam
Katarzyna Kamieniecka <k.murat1@bradford.ac.uk> <ubuntu@ip-172-31-23-81.ec2.internal>
Katrin Leinweber <kalei@posteo.de> # GH user: katrinleinweber
Katrin Leinweber <kalei@posteo.de> <9948149+katrinleinweber@users.noreply.github.com>
Keith Suderman <suderman@jhu.edu>
Keizo Uehara <keizou.bos@gmail.com> # GH user: KeizoUehara
Keizo Uehara <keizou.bos@gmail.com> <Uehara.Keizo@mss.co.jp>
Kelly Vincent <kpvincent@bx.psu.edu> # GH user: ??
Kenzo-Hugo Hillion <hillion.kenzo@gmail.com> # GH user: khillion
Kenzo-Hugo Hillion <hillion.kenzo@gmail.com> <kenzo-hugo.hillion1@pasteur.fr>
khaled196 <khalled.jooma@yahoo.com> # GH user: khaled196
Kidane M. Tekle <kidane.tekle@gmail.com> # GH user: kidanem
Kiran Telukunta saraswathi <kiran.telukunta@indiayouth.info> # GH user: telukir
Kjetil Klepper <kjetil.klepper@ntnu.no> # GH user: kjetilkl
Knut Waagan <knutwa@usit.uio.no> # GH user: knutwa-ext
Knut Waagan <knutwa@usit.uio.no> <74406250+knutwa-ext@users.noreply.github.com>
Kyle Ellrott <kellrott@gmail.com> # GH user: kellrott
Kyle Ellrott <kellrott@gmail.com> <kellrott@soe.ucsc.edu>

Matthias Bernt <bernt@informatik.uni-leipzig.de> # GH user: bernt-matthias
Matt Chambers <matt.chambers42@gmail.com> # GH user: chambm
Expand Down
42 changes: 29 additions & 13 deletions doc/relicensing/status.txt
Original file line number Diff line number Diff line change
Expand Up @@ -93,10 +93,28 @@ benfulton, benmarkfulton@gmail.com, https://github.com/galaxyproject/galaxy/pull
atyryshkin, atyryshkina@gmail.com, https://github.com/galaxyproject/galaxy/pull/16970#pullrequestreview-1713563069
Airistotal, danieljosephbouchard@gmail.com, https://github.com/galaxyproject/galaxy/pull/16970#pullrequestreview-1713564514
AndreasSko, me@andreas-sk.de, https://github.com/galaxyproject/galaxy/pull/16970#pullrequestreview-1713735509
kxk302, kxk302@psu.edu, https://github.com/galaxyproject/galaxy/pull/14714
ksuderman, suderman@jhu.edu, https://github.com/galaxyproject/galaxy/pull/16233
jlhg, huang@jianlong.org, https://github.com/galaxyproject/galaxy/pull/16970#pullrequestreview-1713740627
hmenager, herve.menager@gmail.com, https://github.com/galaxyproject/galaxy/pull/16970#pullrequestreview-1713742259
cumbof, fabio.cumbo@gmail.com, https://github.com/galaxyproject/galaxy/pull/16970#pullrequestreview-1713748840
shiltemann, zazkia@gmail.com, https://github.com/galaxyproject/galaxy/pull/16970#pullrequestreview-1713749762
jjkoehorst, jasperkoehorst@gmail.com, https://github.com/galaxyproject/galaxy/pull/16970#pullrequestreview-1713750442
eteriSokhoyan, esokhoyan@gmail.com, https://github.com/galaxyproject/galaxy/pull/16970#pullrequestreview-1713753043
johnbradley, johnbradley2008@gmail.com, https://github.com/galaxyproject/galaxy/pull/16970#pullrequestreview-1713788099
saketkc, saketkc@gmail.com, https://github.com/galaxyproject/galaxy/pull/16970#pullrequestreview-1713788190
glormph, jorrit.boekel@scilifelab.se, https://github.com/galaxyproject/galaxy/pull/16970#pullrequestreview-1713790717
CarlosBorroto, carlos.borroto@gmail.com, https://github.com/galaxyproject/galaxy/pull/16970#pullrequestreview-1713792053
bagnacan, <andrea.bagnacani@uni-rostock.de, https://github.com/galaxyproject/galaxy/pull/16970#pullrequestreview-1713808274
abrenner, <aebrenne@uci.edu, https://github.com/galaxyproject/galaxy/pull/16970#pullrequestreview-1713815484
jaidevjoshi83, jaidev53ster@gmail.com, https://github.com/galaxyproject/galaxy/pull/16970#pullrequestreview-1713822591
KeizoUehara, keizou.bos@gmail.com, https://github.com/galaxyproject/galaxy/pull/13074
khaled196, khalled.jooma@yahoo.com, https://github.com/galaxyproject/galaxy/pull/16503
kjetilkl, kjetil.klepper@ntnu.no, https://github.com/galaxyproject/galaxy/pull/12269
knutwa-ext, knutwa@usit.uio.no, https://github.com/galaxyproject/galaxy/pull/12099

# not yet agreed, needs research
Evgeny Anatskiy <evgeny.anatskiy@gmail.com> # GH user: anatskiy
Andrea Bagnacani <andrea.bagnacani@uni-rostock.de> # GH user: bagnacan
Ann Loraine <aloraine@uncc.edu> # GH user: aloraine , only one commit, to change a URL: https://github.com/galaxyproject/galaxy/commit/ea22750604bb2b14a437eddc6ab34dd9d4d9fba7
Anton Nekrutenko <anton@nekrut.org> # GH user: nekrut
Arjun Nath <arjun@bx.psu.edu> # no GH user, last contribution in 2007
Expand Down Expand Up @@ -125,9 +143,7 @@ Delphine Lariviere <lariviere.delphine@gmail.com> # GH user: Delphine-L
Devon Ryan <dpryan79@gmail.com> # GH user: dpryan79
dorine francheteau <dorine@bx.psu.edu> # GH user: ??
Eric Paniagua <paniagua.cshl@gmail.com> # GH user: ??
Eteri Sokhoyan <esokhoyan@gmail.com> # GH user: eteriSokhoyan
Fabien Mareuil <fmareuil@pasteur.fr> # GH user: fmareuil
Fabio Cumbo <fabio.cumbo@gmail.com> # GH user: cumbof
fescudie <fescudie@toulouse.inra.fr> # GH user: fescudie
Florent Angly <florent.angly@gmail.com> # GH user: fangly
Frederic Sapet <frederic.sapet@limagrain.com> # GH user: FredericBGA
Expand All @@ -143,7 +159,6 @@ Guruprasad Anada <gua110@bx.psu.edu> # GH user: ??
Hanfei Sun <ad9075@gmail.com> # GH user: hanfeisun
Hans-Rudolf Hotz <hrhotz@users.noreply.github.com> # GH user: hrhotz
Henk van den Toorn <vdtoorn@hotmail.com> # GH user: vdtoorn
Hervé Ménager <herve.menager@gmail.com> # GH user: hmenager
David Norris <Hillrunner2008@gmail.com> # GH user: Hillrunner2008
Hiral Vora <hvora1@uncc.edu> # GH user: ??
Hunter Moseley <hunter.moseley@louisville.edu> # GH user: ??
Expand All @@ -155,44 +170,45 @@ Ira Cooke <iracooke@gmail.com> # GH user: iracooke
Islam Heggy <islam.heggy@gmail.com> # GH user: IslamHeggy
Ivan Kuzmin <inkuzm@gmail.com> # GH user: inkuzmin
Iyad Kandalaft <ik@iyadk.com> # GH user: IyadKandalaft
Jayadev Joshi <jaidev53ster@gmail.com> # GH user: jaidevjoshi83
James Boocock <sfk2001@gmail.com> # GH user: theboocock
James Taylor <james@jamestaylor.org # GH user: jxtx (deceased, RIP buddy)
janani <guru.jan@gmail.com> # GH user: janani-prasad
Jan Kanis <jan.code@jankanis.nl> # GH user: JanKanis
Jasper Koehorst <jasperkoehorst@gmail.com> # GH user: jjkoehorst
Jean-Frédéric <jean-frederic.berthelot@lifl.fr> # GH user: JeanFred
Jeffrey Thiessen <jeffreylthiessen@gmail.com> # GH user: JeffreyThiessen
Jennifer Cabral <jencabral@gmail.com> # GH user: JenCabral
Jens Preußner <jenzopr@users.noreply.github.com> # GH user: jenzopr
Jeremy Goecks <jgoecks@users.noreply.github.com> # GH user: jgoecks
Jesse c j van Dam <jesse.vandam@wur.nl> # GH user: jessevdam
Jianbin He <jbhe@bx.psu.edu> # GH user: ??
Jian-Long Huang <huang@jianlong.org> # GH user: jlhg
Joachim Jacob <joachim.jacob@gmail.com> # GH user: joachimjacob
Joachim Wolff <wolffj@informatik.uni-freiburg.de> # GH user: joachimwolff
John Bradley <johnbradley2008@gmail.com> # GH user: johnbradle
John Duddy <jduddy@illumina.com> # GH user: ??
Jorrit Boekel <jorrit.boekel@scilifelab.se> # GH user: glormph
jra001k <jra001k@gmail.com> # GH user: ???
(JR) Ray Sajulga <jraysajulga@gmail.com> # GH user: jraysajulga
Juan David Mendez Solano <juan.mendez@imtek.uni-freiburg.de> # GH user: Realjuan
Juleen Graham <juleengrah@gmail.com> # GH user: juleengraham
Julien Seiler <seilerj@igbmc.fr> # GH user: julozi
Junzhou Wang <junzhouwang@gmail.com> # GH user: junzwang
Jeremy Volkening <jdv@base2bio.com> # GH user: jvolkening
Saket Choudhary <saketkc@gmail.com> # GH user: saketkc, last contribution in 2014
Saskia Hiltemann <zazkia@gmail.com> # GH user: shiltemann, last contribution in 2018
Scott McManus <scottmcmanus@gatech.edu> # No GH user, last contribution in 2012
Sebastian Kapust <sebastian@kapust.org> # GH user: scrathat, last contribution in 2020
Steven Weaver <sweaver@temple.edu> # GH user: stevenweaver, last contribution 2018
Kai Kruse <krusekai@gmail.com> # GH user: kaukrise
kaktus42 <vowinkel.alexander@gmail.com> # GH user: kaktus42
Kanwei Li <kanwei@gmail.com> # GH user: kanwei
Katarzyna Kamieniecka <k.murat1@bradford.ac.uk> # GH user: kpbioteam
Katrin Leinweber <kalei@posteo.de> # GH user: katrinleinweber
Kelly Vincent <kpvincent@bx.psu.edu> # GH user: ??
Kenzo-Hugo Hillion <hillion.kenzo@gmail.com> # GH user: khillion
Kidane M. Tekle <kidane.tekle@gmail.com> # GH user: kidanem
Kiran Telukunta saraswathi <kiran.telukunta@indiayouth.info> # GH user: telukir
Kyle Ellrott <kellrott@gmail.com> # GH user: kellrott

# not agreed, but contributions no longer present
Adam Brenner <aebrenne@uci.edu> # GH user: abrenner, only commits to tools moved to tool shed (no longer in galaxy)
Abdulrahman Azab <eng.azab@gmail.com> # GH user: abdulrahmanazab, one-line contribution, rewritten by John Chilton
Andrea Sbardellati <andrea.sbardellati@crs4.it> # only one commit to bowtie2 wrapper, since moved to the tool shed
Benjamin Carr <BenjaminHCCarr@users.noreply.github.com> # GH user: BenjaminHCCarr, single line change, no longer present
Carlos Borroto <carlos.borroto@gmail.com> # GH user: CarlosBorroto, single line change, no longer present in the code
Christopher Bare <christopherbare@gmail.com> # GH user: cbare, contribution reverted or otherwise unused
Clare Sloggett <sloc@unimelb.edu.au> # GH user: claresloggett, code heavily refactored since 2012 contribution
Dan Blanchard <dan.blanchard@gmail.com> # GH user: dan-blanchard, one liner changing the drmaa version